Structure of PDB 8ibx Chain C Binding Site BS01

Receptor Information
>8ibx Chain C (length=922) Species: 7091 (Bombyx mori) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GWTCQFCERTFSTNRGLGVHKRRAHPVETNTDAAPMMVKRRWHGEEIDLL
ARTEARLLAERGQCSGGDLFGALPGFGRTLEAIKGQRRREPYRALVQAHL
ARFGSSPDAARVLSELLEGAGRRRACRAMTSRQKRRAEYARVQELYKKCR
SRAAAEVIDGACGGVGHSLEEMETYWRPILERVSDAPGPTPEALHALGRT
QLWKPISVEEIKASRFDWRTSPGPDGIRSGQWRAVPVHLKAEMFNAWMAR
GEIPEILRQCRTVFVPKVERPGGPGEYRPISIASIPLRHFHSILARRLLA
CCPPDARQRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFD
TVSHEALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRG
VRQGDPLSPILFNVVMDLILASLPERVGYRLEMELVSALAYAYDLVLLAG
SKVGMQESISAVDCVGRQMGLRLNCRKSAVLSMIPDGHRKKHHYLTERTF
NIGGKPLRQVSCVERWRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQ
QRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLRLPADVP
KAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKI
RKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTP
TSTKWIRERCAQITGRDFVQFVHTHINALPSRIRGSRGRRGGGESSLTCR
AGCKVRETTAHILQQCHRTHGGRILRHNKIVSFVAKAMEENKWTVELEPR
LRTSVGLRKPAIIASRDGVGVIVDVQVVSGQRSLDELHREKRNKYGNHGE
LVELVAGRLGLPKAECVRATSCTISWRGVWSLTSYKELRSIIGLREPTLQ
IVPILALRGSHMNWTRFNQMTS
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8ibx Structural RNA components supervise the sequential DNA cleavage in R2 retrotransposon.
Resolution3.74 Å
Binding residue
(original residue number in PDB)		R125 R132 K149 R151 W152 R188 T189 E191 A192 R517 K676 A782 D783 K786 K837 S872 V873 R922 G923 R925
Binding residue
(residue number reindexed from 1)		R15 R22 K39 R41 W42 R78 T79 E81 A82 R332 K491 A597 D598 K601 K652 S687 V688 R737 G738 R740
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003964 RNA-directed DNA polymerase activity
Biological Process
GO:0006278 RNA-templated DNA biosynthetic process
GO:0071897 DNA biosynthetic process

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Molecular Function
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Biological Process
External links
PDB RCSB:8ibx, PDBe:8ibx, PDBj:8ibx
PDBsum8ibx
PubMed37301196
UniProtV9H052

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