Structure of PDB 8ibw Chain C Binding Site BS01

Receptor Information
>8ibw Chain C (length=922) Species: 7091 (Bombyx mori) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GWTCQFCERTFSTNRGLGVHKRRAHPVETNTDAAPMMVKRRWHGEEIDLL
ARTEARLLAERGQCSGGDLFGALPGFGRTLEAIKGQRRREPYRALVQAHL
ARFGSSPDAARVLSELLEGAGRRRACRAMTSRQKRRAEYARVQELYKKCR
SRAAAEVIDGACGGVGHSLEEMETYWRPILERVSDAPGPTPEALHALGRT
QLWKPISVEEIKASRFDWRTSPGPDGIRSGQWRAVPVHLKAEMFNAWMAR
GEIPEILRQCRTVFVPKVERPGGPGEYRPISIASIPLRHFHSILARRLLA
CCPPDARQRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFD
TVSHEALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRG
VRQGDPLSPILFNVVMDLILASLPERVGYRLEMELVSALAYAYDLVLLAG
SKVGMQESISAVDCVGRQMGLRLNCRKSAVLSMIPDGHRKKHHYLTERTF
NIGGKPLRQVSCVERWRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQ
QRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLRLPADVP
KAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKI
RKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTP
TSTKWIRERCAQITGRDFVQFVHTHINALPSRIRGSRGRRGGGESSLTCR
AGCKVRETTAHILQQCHRTHGGRILRHNKIVSFVAKAMEENKWTVELEPR
LRTSVGLRKPAIIASRDGVGVIVDVQVVSGQRSLDELHREKRNKYGNHGE
LVELVAGRLGLPKAECVRATSCTISWRGVWSLTSYKELRSIIGLREPTLQ
IVPILALRGSHMNWTRFNQMTS
Ligand information
>8ibw Chain A (length=43) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
caagcgcgggtaaacggcgggagtaactatgactctcttaagg
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8ibw Structural RNA components supervise the sequential DNA cleavage in R2 retrotransposon.
Resolution3.6 Å
Binding residue
(original residue number in PDB)
M146 K149 R151 S175 K194 R197 R198 G672 H673 K675 S759 D760 R848
Binding residue
(residue number reindexed from 1)
M36 K39 R41 S65 K84 R87 R88 G487 H488 K490 S574 D575 R663
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003964 RNA-directed DNA polymerase activity
Biological Process
GO:0006278 RNA-templated DNA biosynthetic process
GO:0071897 DNA biosynthetic process

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Molecular Function

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Biological Process
External links
PDB RCSB:8ibw, PDBe:8ibw, PDBj:8ibw
PDBsum8ibw
PubMed37301196
UniProtV9H052

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