Structure of PDB 8hil Chain C Binding Site BS01

Receptor Information

>8hil Chain C (length=300) Species: 3712 (Brassica oleracea) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

GATYQRFPKVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDL
VEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFC
SVEFRLSAKCVTDQTLDVTSKDLYSADPTVTPVDFGDSSGADSSEQRGII
IVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDT
LTDDEKIDLIESSPTKVFDFDAVTRQVVVVDPEAYTYDEEVIKKAEAMGK
QGLIEIRPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSDDTV

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

8hil Chain C Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8hil Structure and mechanism of the plant RNA polymerase V.
Resolution	3.57 Å
Binding residue (original residue number in PDB)	C94 C100
Binding residue (residue number reindexed from 1)	C91 C97
Annotation score	1

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0001055	RNA polymerase II activity
GO:0003677	DNA binding
GO:0003899	DNA-directed 5'-3' RNA polymerase activity
GO:0046983	protein dimerization activity

	Biological Process
GO:0006351	DNA-templated transcription
GO:0006366	transcription by RNA polymerase II

	Cellular Component
GO:0000428	DNA-directed RNA polymerase complex
GO:0005665	RNA polymerase II, core complex

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Molecular Function

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Cellular Component

External links

PDB	RCSB:8hil, PDBe:8hil, PDBj:8hil
PDBsum	8hil
PubMed	36893216
UniProt	A0A0D3D418

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