Structure of PDB 8bns Chain C Binding Site BS01

Receptor Information
>8bns Chain C (length=433) Species: 436114 (Sulfurihydrogenibium sp. YO3AOP1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MIQTVEFNEQFSKALDLMENTNKNVLIVGRAGTGKSTLLNYFRNNTKKKI
AVLAPTGVAAVNIKGQTIHSFFNFKPDITLSSVKDIKPKNKEIYKKLDAI
VIDEVSMVRADLFDCINEFLKIHGKQPGEPFGGIQLILIGDLYQLPPVVT
SSEKKFFSQIYKSPFFFDSISFNEAEFEFVELEKVYRQKDEKFIKLLNAI
RNKTIEEKDLEELNKRYIPDFEPDEKEFYIYLTTTNELADKINQQKLEKL
KGKKYVYQGYIEGDFSEKDLPAPLELVIKKGTQVMLLNNDYQGRWINGSM
GRVVDIEKVKGNEDIIWVELEDGEEVPVQPYEWDMFEFYYDKAQKKIKSR
TVGSYYQYPLKPAWAITIHKSQGLTFDKVIIDIGRGTFSHGQLYVALSRC
RSLEGLVLKKPISEKYIWLDKRVVSFLTKYQYK
Ligand information
Ligand IDADP
InChIInChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyXTWYTFMLZFPYCI-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N
FormulaC10 H15 N5 O10 P2
NameADENOSINE-5'-DIPHOSPHATE
ChEMBLCHEMBL14830
DrugBankDB16833
ZINCZINC000012360703
PDB chain8bns Chain C Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8bns Structural Studies of Pif1 Helicases from Thermophilic Bacteria.
Resolution3.24 Å
Binding residue
(original residue number in PDB)		V5 F11 G32 T33 G34 K35 S36 T37 Y186 R187
Binding residue
(residue number reindexed from 1)		V5 F11 G32 T33 G34 K35 S36 T37 Y186 R187
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 18:59:33 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8bns', asym_id = 'C', bs = 'BS01', title = 'Structural Studies of Pif1 Helicases from Thermophilic Bacteria.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8bns', asym_id='C', bs='BS01', title='Structural Studies of Pif1 Helicases from Thermophilic Bacteria.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0000723,0003678,0006281', uniprot = '', pdbid = '8bns', asym_id = 'C'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000723,0003678,0006281', uniprot='', pdbid='8bns', asym_id='C')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>