Structure of PDB 8bdc Chain C Binding Site BS01

Receptor Information
>8bdc Chain C (length=963) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LVNFIQANFKKRECVFFTKDSKATENVCKCGYAQSQHMEGTQINQSEKWN
YKKHTKEFPTDAFGDIQFETLGKKGKYIRLSCDTDAEILYELLTQHWHLK
TPNLVISVTGGAKNFALKPRMRKIFSRLIYIAQSKGAWILTGGTHYGLMK
YIGEVVRDNTISRSSEENIVAIGIAAWGMVSNRDTLIRNYFLAQYLMDDF
TRDPLYILDNNHTHLLLVDNGCHGHPTVEAKLRNQLEKYISERTIQDSNY
GGKIPIVCFAQGGGKETLKAINTSIKNKIPCVVVEGSGQIADVIASLVEV
EDALTSSAVKEKLVRFLPRTVSRLPEEETESWIKWLKEILECSHLLTVIK
MEEAGDEIVSNAISYALYKAFSTSEQDKDNWNGQLKLLLEWNQLDLANDE
IFTNDRRWESADLQEVMFTALIKDRPKFVRLFLENGLNLRKFLTHDVLTE
LFSNHFSTLVYRNLQIAKNSYNDALLTFVWKLVANFRRTRHPLQALFIWA
ILQNKKELSKVIWEQTRGCTLAALGASKLLKTLAKVKNDINAAGESEELA
NEYETRAVELFTECYSSDEDLAEQLLVYSCEAWGGSNCLELAVEATDQHF
IAQPGVQNFLSKQWYGEISRDTKNWKIILCLFIIPLVGCGFVSFRKKPKL
LWYYVAFFTSPFVVFSWNVVFYIAFLLLFAYVLLMDFHSVPHPPELVLYS
LVFVLFCDEVRQWYVNGVNYFTDLWNVMDTLGLFYFIAGIVFRLHSSNKS
SLYSGRVIFCLDYIIFTLRLIHIFTVSRNLGPKIIMLQRMLIDVFFFLFL
FAVWMVAFGVARQGILRQRWRWIFRSVIYEPYLAMFGPEWITIPLVCIYM
LSTNILLVNLLVAMFGYTVGNDQVWKFQRYFLVQEYCSRLNIPFPFIVFA
YFYMVVKKCFKDNETLAWEGVMKENYLVKINTKANEMRHRFRQLDTKLND
LKGLLKEIANKIK
Ligand information
Ligand IDY01
InChIInChI=1S/C31H50O4/c1-20(2)7-6-8-21(3)25-11-12-26-24-10-9-22-19-23(35-29(34)14-13-28(32)33)15-17-30(22,4)27(24)16-18-31(25,26)5/h9,20-21,23-27H,6-8,10-19H2,1-5H3,(H,32,33)/t21-,23+,24+,25-,26+,27+,30+,31-/m1/s1
InChIKeyWLNARFZDISHUGS-MIXBDBMTSA-N
SMILES
SoftwareSMILES
CACTVS 3.352CC(C)CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4C[C@H](CC[C@]4(C)[C@H]3CC[C@]12C)OC(=O)CCC(O)=O
OpenEye OEToolkits 1.6.1CC(C)CCCC(C)C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)OC(=O)CCC(=O)O)C)C
OpenEye OEToolkits 1.6.1CC(C)CCC[C@@H](C)[C@H]1CC[C@@H]2[C@@]1(CC[C@H]3[C@H]2CC=C4[C@@]3(CC[C@@H](C4)OC(=O)CCC(=O)O)C)C
CACTVS 3.352CC(C)CCC[CH](C)[CH]1CC[CH]2[CH]3CC=C4C[CH](CC[C]4(C)[CH]3CC[C]12C)OC(=O)CCC(O)=O
FormulaC31 H50 O4
NameCHOLESTEROL HEMISUCCINATE
ChEMBL
DrugBank
ZINCZINC000058638837
PDB chain8bdc Chain C Residue 1201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8bdc Structure of human TRPM8 channel.
Resolution2.65 Å
Binding residue
(original residue number in PDB)		W682 F735 F738 L853 R998
Binding residue
(residue number reindexed from 1)		W614 F662 F665 L780 R879
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005216 monoatomic ion channel activity
GO:0005262 calcium channel activity
GO:0005515 protein binding
GO:0042802 identical protein binding
GO:0046872 metal ion binding
GO:0099604 ligand-gated calcium channel activity
Biological Process
GO:0006811 monoatomic ion transport
GO:0006816 calcium ion transport
GO:0006874 intracellular calcium ion homeostasis
GO:0009266 response to temperature stimulus
GO:0009409 response to cold
GO:0019722 calcium-mediated signaling
GO:0034220 monoatomic ion transmembrane transport
GO:0050955 thermoception
GO:0055085 transmembrane transport
GO:0070588 calcium ion transmembrane transport
GO:0120162 positive regulation of cold-induced thermogenesis
Cellular Component
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005886 plasma membrane
GO:0009897 external side of plasma membrane
GO:0016020 membrane
GO:0044853 plasma membrane raft
GO:0045121 membrane raft

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8bdc, PDBe:8bdc, PDBj:8bdc
PDBsum8bdc
PubMed37857704
UniProtQ7Z2W7|TRPM8_HUMAN Transient receptor potential cation channel subfamily M member 8 (Gene Name=TRPM8)

[Back to BioLiP]