Structure of PDB 7z84 Chain C Binding Site BS01

Receptor Information
>7z84 Chain C (length=586) Species: 469008 (Escherichia coli BL21(DE3)) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EPAWQTRDHLDDPVIGELRNRFGPDAFTVQATRTGVPVVWIKREQLLEVG
DFLKKLPKPYVMLFDLHGMDERLRTHREGLPAADFSVFYHLISIDRNRDI
MLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMP
QTWKGHPLRKDYPARATEFSPFELTKAKQDLEMEALTFKPEEWGMKRNED
FMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQS
WHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELF
RINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFR
IGGVAHDLPRGWDRLLREFLDWMPKRLASYEKAALQNTILKGRSQGVAAY
GAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGVSDCY
TRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERTLQHIET
LITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTP
SYAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR
Ligand information
Ligand IDSF4
InChIInChI=1S/4Fe.4S
InChIKeyLJBDFODJNLIPKO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7[S]12[Fe]3[S]4[Fe]1[S]5[Fe]2[S]3[Fe]45
CACTVS 3.385S1[Fe]S[Fe]1.S2[Fe]S[Fe]2
FormulaFe4 S4
NameIRON/SULFUR CLUSTER
ChEMBL
DrugBank
ZINC
PDB chain7z84 Chain B Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7z84 A universal coupling mechanism of respiratory complex I.
Resolution2.87 Å
Binding residue
(original residue number in PDB)		R254 H359
Binding residue
(residue number reindexed from 1)		R240 H345
Annotation score1
Enzymatic activity
Enzyme Commision number 7.1.1.-
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0003954 NADH dehydrogenase activity
GO:0005515 protein binding
GO:0008137 NADH dehydrogenase (ubiquinone) activity
GO:0016651 oxidoreductase activity, acting on NAD(P)H
GO:0048038 quinone binding
GO:0050136 NADH:ubiquinone reductase (non-electrogenic) activity
GO:0051287 NAD binding
Biological Process
GO:0022904 respiratory electron transport chain
GO:1902600 proton transmembrane transport
Cellular Component
GO:0005737 cytoplasm
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0030964 NADH dehydrogenase complex
GO:0045271 respiratory chain complex I

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7z84, PDBe:7z84, PDBj:7z84
PDBsum7z84
PubMed36104567
UniProtP33599|NUOCD_ECOLI NADH-quinone oxidoreductase subunit C/D (Gene Name=nuoC)

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