Structure of PDB 7yed Chain C Binding Site BS01

Receptor Information
>7yed Chain C (length=1086) Species: 538123 (Mammalian orthoreovirus 3) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHITEFISSWQN
HPIVQAQLLHADTPRLVTWDAGLCTSFKIVPIVPAQVPQDVLAYTFFTSS
YAIQSPFPEAAVSRIVVHTRWASNVDFDRDSSVIMAPPTENNIHLFKQLL
NTETLSVRGANPLMFRANVLHMLLEFVLDNLYLNRHTGFSQDHTPFTEGA
NLRSLPGPDAEKWYSIMYPTRMGTPNVSKICNFVASCVRNRVGRFDRAQM
MNGAMSEWVDVFETSDALTVSIRGRWMARLARMNINPTEIEWALTECAQG
YVTVTSPYAPSVNRLMPYRISNAERQISQIIRVMNIGNNATVIQPVLQDI
SVLLQRISPLQIDPTIISNTMSTVSESTTQTLSPASSILGKLRPSNSDFS
SFRVALAGWLYNGVVTTVIDDSSYPKDGGSVTSLENLWDFFILALALPLT
TDPCAPVKAFMTLANMMVGFETIPMDNQIYTQSRRASAFSTPHTWPRCFM
NIQLISPIDAPILRQWAEIIHRYWPNPSQIRYGTPNVFGSANLFTPPEVL
LLPIDHQPANVTTPTLDFTNELTNWRARVCELMKNLVDNQRYQPGWTQSL
VSSMRGTLGKLKLIKSMTPMYLQQLAPVELAVIAPMLPFPPFQVPYVRLD
RDRVPTMVGVTRQSRDTITQPALSLSTTNTTVGVPLALDARAITVALLSG
KYPPDLVTNVWYADAIYPMYADTEVFSNLQRDVITCEAVQTLVTLVAQIS
ETQYPVDRYLDWIPSLRASAATAATFAEWVNTSMKTAFDLSDMLLEPLLS
GDPRMTQLAIQYQQYNGRTFNVIPEMPGSVIADCVQLTAEVFNHEYNLFG
IARGDIIIGRVQSTHLWSPLAPPPDLVFDRDTPGVHIFGRDCRISFGMNG
AAPMIRDETGMMVPFEGNWIFPLALWQMNTRYFNQQFDAWIKTGELRIRI
EMGAYPYMLHYYDPRQYANAWNLTSAWLEEITPTSIPSVPFMVPISSDHD
ISSAPAVQYIISTEYNDRSLFCTNSSSPQTIAGPDKHIPVERYNILTNPD
APPTQIQLPEVVDLYNVVTRYAYETPPITAVVMGVP
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain7yed Chain C Residue 1301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7yed In situ structures of polymerase complex of mammalian reovirus illuminate RdRp activation and transcription regulation.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		C183 H199 H203
Binding residue
(residue number reindexed from 1)		C4 H20 H24
Annotation score1
Enzymatic activity
Enzyme Commision number 3.6.4.13: RNA helicase.
Gene Ontology
Molecular Function
GO:0003724 RNA helicase activity
GO:0004386 helicase activity
GO:0016787 hydrolase activity
Biological Process
GO:0006370 7-methylguanosine mRNA capping
Cellular Component
GO:0019028 viral capsid
GO:0039625 viral inner capsid

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7yed, PDBe:7yed, PDBj:7yed
PDBsum7yed
PubMed36469786
UniProtC9E874

[Back to BioLiP]