Structure of PDB 7ye1 Chain C Binding Site BS01

Receptor Information
>7ye1 Chain C (length=1312) Species: 565050 (Caulobacter vibrioides NA1000) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QSFTGKKRIRKSFGRIPEAVQMPNLIEVQRSSYEQFLQRETRPGLRRDEG
VEAVFKSVFPIKDFNERAVLEYVSYEFEEPKYDVEECIQRDMTFAAPLKV
KLRLIVFETEEETGARSVKDIKEQDVYMGDIPLMTDKGTFIVNGTERVIV
SQMHRSPGVFFDHDKGKTHASGKLLFAARVIPYRGSWLDFEFDAKDIVYV
RIDRRRKLPATTFLYALGMDGEEILTTFYDVVPFEKRSGGWATPYKPERW
RGVKPEFPLVDADTGEEVAPAGTKITARQAKKFADGGLKTLLTGRYLARD
AEIYAEAGDELDVTSIQALADDVLDIDHVTVGAYMRNTLRVDKNAIREDA
LFDIYRVMRPGEPPTVEAAEAMFKSLFFDAERYDLSSVGRVKMNMRLEQD
VSDEVRILRKEDVLAVLKVLVGLRDGRGEIDDIDNLGNRRVRSVGELLEN
QYRVGLLRMERAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLS
QFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIE
TPEGPNIGLINSLATHARVNKYGFIESPYRRVKDGKPQDEVVYMSAMEES
KHVIAQSNIKVAEGEIVEDLVPGRINGEPTLLQKETVDLMDVSPRQVVSV
AAALIPFLENDDANRALMGSNMQRQAVPLVQSDAPLVGTGMEAVVARDSG
AVVIAKRTGVVEQIDGTRIVIRATEETDPARSGVDIYRMSKFQRSNQSTC
INQRPLVKVGDRIVAGDIIADGPSTELGELALGRNALVAFMPWNGYNFED
SILISERIVRDDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVGEEALRN
LDEAGIVAIGAEVQPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVR
DTSLRLPPGVAGTIVDVRVFNRHGVDKDERALAIERAEIDRLGKDRDDEF
AILNRNISGRLKELLIGKLAQVASGLWWQIALEDEKAMGELESLRRLFDE
NRKRLDRRFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRH
GNKGVISRILPIEDMPFLADGTHVDVVLNPLGVPSRMNVGQIFETHLGWA
CANLGKQITNLLEDWQQGGQKQALVERLTEEELPDTEEGLVELARNLGKG
VPIATPVFDGARMDDIEGHLEMAGVNKSGQSILFDGLTGEQFKRPVTVGY
IYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGAAYTLQEMLTVKSDDVAGRTKVYESIVRGDDTFEAGIPESFNVLVKE
MRSLGLNVELEN
Ligand information
>7ye1 Chain H (length=57) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaaaaaagagttgacacccgggcgaatccctgctataatgggagctgtca
cggatgc
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7ye1 Cryo-EM structures of Caulobacter crescentus transcription activation complex with an essential cell cycle regulator GcrA
Resolution3.7 Å
Binding residue
(original residue number in PDB)		R157 R181 W189 D205 R206 E382 R459 R550 V555
Binding residue
(residue number reindexed from 1)		R155 R179 W187 D203 R204 E362 R439 R530 V535
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0032549 ribonucleoside binding
GO:0034062 5'-3' RNA polymerase activity
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7ye1, PDBe:7ye1, PDBj:7ye1
PDBsum7ye1
PubMed
UniProtB8GZW7|RPOB_CAUVN DNA-directed RNA polymerase subunit beta (Gene Name=rpoB)

[Back to BioLiP]