Structure of PDB 7w0j Chain C Binding Site BS01

Receptor Information
>7w0j Chain C (length=380) Species: 269800 (Thermobifida fusca YX) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DLYRPTEEHEALREAIRSVAEDKIAPHAADVDEQSRFPQEAYEALRASDF
HAPHVAEEYGGVGADALATCIVIEEIARVCASSSLIPAVNKLGSMPLILS
GSDEVKQRYLPELASGEAMFSYGLSEREAGSDTASMRTRAVRDGDDWILN
GQKSWITNAGISKYYTVMAVTDPDGPRGRNISAFVVHIDDPGFSFGEPER
KLGIKGSPTRELIFDNVRIPGDRLVGKVGEGLRTALRTLDHTRVTIGAQA
VGIAQGALDYALGYVKERKQFGKAIADFQGIQFMLADMAMKLEAARQMVY
VAAAKSERDDADLSFYGAAAKCFASDVAMEITTDAVQLLGGYGYTRDYPV
ERMMRDAKITQIYEGTNQIQRVVMARQLLK
Ligand information
Ligand ID875
InChIInChI=1S/C15H26N6O13P2/c16-1-6(22)10(24)7(23)2-31-35(27,28)34-36(29,30)32-3-8-11(25)12(26)15(33-8)21-5-20-9-13(17)18-4-19-14(9)21/h4-8,10-12,15,22-26H,1-3,16H2,(H,27,28)(H,29,30)(H2,17,18,19)/t6-,7+,8+,10-,11+,12+,15+/m0/s1
InChIKeyJFHZDRWPWXRIBP-AOOZFPJJSA-N
SMILES
SoftwareSMILES
CACTVS 3.385NC[C@H](O)[C@H](O)[C@H](O)CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23
CACTVS 3.385NC[CH](O)[CH](O)[CH](O)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23
OpenEye OEToolkits 2.0.7c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@H]([C@H]([C@H](CN)O)O)O)O)O)N
OpenEye OEToolkits 2.0.7c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC(C(C(CN)O)O)O)O)O)N
FormulaC15 H26 N6 O13 P2
Name[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4S)-5-azanyl-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate
ChEMBL
DrugBank
ZINC
PDB chain7w0j Chain H Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7w0j Crystal structure of an Acyl-CoA dehydrogenase Tfu_1647
Resolution3.13 Å
Binding residue
(original residue number in PDB)
S129 S135 W159 Y367 T370
Binding residue
(residue number reindexed from 1)
S125 S131 W155 Y363 T366
Annotation score3
Enzymatic activity
Enzyme Commision number 6.2.1.5: succinate--CoA ligase (ADP-forming).
Gene Ontology
Molecular Function
GO:0003995 acyl-CoA dehydrogenase activity
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
GO:0050660 flavin adenine dinucleotide binding

View graph for
Molecular Function
External links
PDB RCSB:7w0j, PDBe:7w0j, PDBj:7w0j
PDBsum7w0j
PubMed
UniProtA0A4D5XMK4

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