Structure of PDB 7sza Chain C Binding Site BS01

Receptor Information
>7sza Chain C (length=225) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EAEALAAARERSSRFLSGLELVKQGAEARVFRGRFQGRAAVIKHRFPKGY
RHPALEARLGRRRTVQEARALLRCRRAGISAPVVFFVDYASNCLYMEEIE
GSVTVRDYIQSTMETEQGLSNLAKTIGQVLARMHDEDLIHGDLTTSNMLL
KPPLEQLNIVLIDFGLSFISALPEDKGVDLYVLEKAFLSTHPNTETVFEA
FLKSYSTSSKKARPVLKKLDEVRLR
Ligand information
Ligand IDDUI
InChIInChI=1S/C13H11N3O4/c14-7-3-1-2-6-10(7)13(20)16(12(6)19)8-4-5-9(17)15-11(8)18/h1-3,8H,4-5,14H2,(H,15,17,18)/t8-/m1/s1
InChIKeyUVSMNLNDYGZFPF-MRVPVSSYSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C1NC(=O)CCC1N1C(=O)c2cccc(N)c2C1=O
OpenEye OEToolkits 2.0.7c1cc2c(c(c1)N)C(=O)N(C2=O)[C@@H]3CCC(=O)NC3=O
CACTVS 3.385Nc1cccc2C(=O)N([C@@H]3CCC(=O)NC3=O)C(=O)c12
CACTVS 3.385Nc1cccc2C(=O)N([CH]3CCC(=O)NC3=O)C(=O)c12
OpenEye OEToolkits 2.0.7c1cc2c(c(c1)N)C(=O)N(C2=O)C3CCC(=O)NC3=O
FormulaC13 H11 N3 O4
Name4-amino-2-[(3R)-2,6-dioxopiperidin-3-yl]-1H-isoindole-1,3(2H)-dione
ChEMBLCHEMBL1788309
DrugBank
ZINCZINC000001997125
PDB chain7sza Chain C Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7sza Crystal Structure Analysis of human PRPK complex with a compound
Resolution1.9 Å
Binding residue
(original residue number in PDB)		V58 M113 E115 I116 S119 I182 D183
Binding residue
(residue number reindexed from 1)		V41 M96 E98 I99 S102 I162 D163
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.11.1: non-specific serine/threonine protein kinase.
3.6.-.-
Gene Ontology
Molecular Function
GO:0002039 p53 binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0044024 histone H2AS1 kinase activity
GO:0106310 protein serine kinase activity
Biological Process
GO:0006338 chromatin remodeling
GO:0006468 protein phosphorylation
GO:0008033 tRNA processing
GO:0016310 phosphorylation
GO:0070525 tRNA threonylcarbamoyladenosine metabolic process
GO:1901796 regulation of signal transduction by p53 class mediator
Cellular Component
GO:0000408 EKC/KEOPS complex
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7sza, PDBe:7sza, PDBj:7sza
PDBsum7sza
PubMed
UniProtQ96S44|PRPK_HUMAN EKC/KEOPS complex subunit TP53RK (Gene Name=TP53RK)

[Back to BioLiP]