Structure of PDB 7o0w Chain C Binding Site BS01

Receptor Information
>7o0w Chain C (length=299) Species: 1379270 (Gemmatimonas phototrophica) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AATDTVQVGYRGTAMEQNYDHGDLKTKFAQVKLPQSPPPAGESPPGPLPW
KNVQVLNDISIAEFNRTMIAMSTWVAGTGNCAYCHNVAAFQDDTLPNGKP
LYTKIVARRMLQMTRNINGNYSQHVKNTGVTCYTCHMGKPLPNGLWFYSS
QTDYLRHYLDRDGARVITQGVAPSNANRSSTKQAEWTYALMISQSRSLGV
NCTYCHNTRQFASWREAPPARVTAYHGILMLRDVNQNYLAPLQPVYPAVR
LGAMGDAPKAQCVTCHNGAYKPLYGAQMAKDFPAMWGRADWNGVPFPGI
Ligand information
Ligand IDMAN
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6+/m1/s1
InChIKeyWQZGKKKJIJFFOK-PQMKYFCFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O)O)O)O)O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namealpha-D-mannopyranose;
alpha-D-mannose;
D-mannose;
mannose
ChEMBLCHEMBL365590
DrugBank
ZINCZINC000003860903
PDB chain7o0w Chain CG Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7o0w 2.4- angstrom structure of the double-ring Gemmatimonas phototrophica photosystem.
Resolution2.47 Å
Binding residue
(original residue number in PDB)		D106 T108 L109
Binding residue
(residue number reindexed from 1)		D92 T94 L95
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005506 iron ion binding
GO:0009055 electron transfer activity
GO:0020037 heme binding
GO:0046872 metal ion binding
Biological Process
GO:0015979 photosynthesis
GO:0019684 photosynthesis, light reaction
Cellular Component
GO:0030077 plasma membrane light-harvesting complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7o0w, PDBe:7o0w, PDBj:7o0w
PDBsum7o0w
PubMed35171663
UniProtA0A143BHR6

[Back to BioLiP]