Structure of PDB 7lli Chain C Binding Site BS01

Receptor Information
>7lli Chain C (length=263) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTYDSVTRQKEPRAPW
MAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHSGSHTYQRMIGCE
LLEDGSTTGFLQYAYDGQDFLIFNKDTLSWLAVDNVAHTIKQAWEANQHE
LLYQKNWLEEECIAWLKRFLEYGKDTLQRTEPPLVRVNRKPGVTALFCKA
HGFYPPEIYMTWMKNGEEIVQEIDYGDILPSGDGTYQAWASIESSNLYSC
HVEHSGVHMVLQV
Ligand information
Ligand ID2LJ
InChIInChI=1S/C12H20N4O6/c1-2-3-13-8-10(15-12(22)16-11(8)21)14-4-6(18)9(20)7(19)5-17/h3,6-7,9,17-20H,2,4-5H2,1H3,(H3,14,15,16,21,22)/b13-3+/t6-,7+,9-/m0/s1
InChIKeyYCMPUNANLDFPQG-FHZGFTDOSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCC=NC1=C(NC[C@H](O)[C@H](O)[C@H](O)CO)NC(=O)NC1=O
OpenEye OEToolkits 2.0.6CC/C=N/C1=C(NC(=O)NC1=O)NC[C@@H]([C@@H]([C@@H](CO)O)O)O
CACTVS 3.385CCC=NC1=C(NC[CH](O)[CH](O)[CH](O)CO)NC(=O)NC1=O
ACDLabs 12.01C1(=O)NC(NC(=C1\N=C\CC)NCC(O)C(O)C(O)CO)=O
OpenEye OEToolkits 2.0.6CCC=NC1=C(NC(=O)NC1=O)NCC(C(C(CO)O)O)O
FormulaC12 H20 N4 O6
Name1-deoxy-1-({2,6-dioxo-5-[(E)-propylideneamino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-ribitol;
5-(2-oxopropylideneamino)-6-D-ribitylaminouracil
ChEMBL
DrugBank
ZINC
PDB chain7lli Chain C Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7lli Recognition of the antigen-presenting molecule MR1 by a V delta 3 + gamma delta T cell receptor.
Resolution3.2 Å
Binding residue
(original residue number in PDB)
Y7 R9 S24 K43 Y62 W69 R94 W156
Binding residue
(residue number reindexed from 1)
Y8 R10 S25 K44 Y63 W70 R95 W157
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:7lli, PDBe:7lli, PDBj:7lli
PDBsum7lli
PubMed34845016
UniProtQ95460|HMR1_HUMAN Major histocompatibility complex class I-related gene protein (Gene Name=MR1)

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