Structure of PDB 7fdy Chain C Binding Site BS01

Receptor Information
>7fdy Chain C (length=337) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AEIYNKDGNKVDLYGKAVGLHYFSKGNSYGGNGDMTYARLGFKGETQINS
DLTGYGQWEYNFQGNNSEGADAQTGNKTHLAFAGLKYADVGSFDYGRNHG
VVYDALGYTDMLPEFGGDTAYSDDFFVGHVGGVATYRNSNFFGLVDGLNF
AVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQ
PLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANK
TQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYF
NKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain7fdy Chain C Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7fdy Design and directed evolution of noncanonical beta-stereoselective metalloglycosidases.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		H82 H132
Binding residue
(residue number reindexed from 1)		H79 H129
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0001530 lipopolysaccharide binding
GO:0005216 monoatomic ion channel activity
GO:0005515 protein binding
GO:0008289 lipid binding
GO:0015288 porin activity
GO:0042802 identical protein binding
GO:0042912 colicin transmembrane transporter activity
GO:0097718 disordered domain specific binding
Biological Process
GO:0006811 monoatomic ion transport
GO:0015031 protein transport
GO:0034220 monoatomic ion transmembrane transport
GO:0043213 bacteriocin transport
GO:0070207 protein homotrimerization
Cellular Component
GO:0009279 cell outer membrane
GO:0016020 membrane
GO:0034702 monoatomic ion channel complex
GO:0046930 pore complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7fdy, PDBe:7fdy, PDBj:7fdy
PDBsum7fdy
PubMed36369431
UniProtP02931|OMPF_ECOLI Outer membrane porin F (Gene Name=ompF)

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