Structure of PDB 7fbo Chain C Binding Site BS01

Receptor Information

>7fbo Chain C (length=282) Species: 1507734,1894972

RIVGQYYDDKTAKLVRKYGPGPRIHYHVGYYPSSEAPRHTRDVTPDAFRR
SIRLHQEGLLRYAAKIWGAEHRLSGRILDVGCGLGGGSLFWAQEYGADVT
AVTNAPEHAPIVEGFARECGVGGRVRTLVCDAMHLPLDGGPYDAAVAIES
SGYFDRPVWFERLAHVLRPGGSVCIEEVFTTRPHGADVWAEYFYTKPATV
LDYAEAAKAAGFELVDDVDATSETLPFWEESTAWTKAVLDSDSTLSAVDR
RQLRISLMANQALGAEWQAGGLRLGFLRFERK

Ligand information

• Ligand ID: SAH
• InChI: InChI=1S/C14H20N6O5S/c15-6(14(23)24)1-2-26-3-7-9(21)10(22)13(25-7)20-5-19-8-11(16)17-4-18-12(8)20/h4-7,9-10,13,21-22H,1-3,15H2,(H,23,24)(H2,16,17,18)/t6-,7+,9+,10+,13+/m0/s1
• InChIKey: ZJUKTBDSGOFHSH-WFMPWKQPSA-N
• SMILES:
  CACTVS 3.341: N[CH](CCSC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)C(O)=O
  OpenEye OEToolkits 1.5.0: c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CSCCC(C(=O)O)N)O)O)N
  CACTVS 3.341: N[C@@H](CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)C(O)=O
  ACDLabs 10.04: O=C(O)C(N)CCSCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
  OpenEye OEToolkits 1.5.0: c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CSCC[C@@H](C(=O)O)N)O)O)N
• Formula: C14 H20 N6 O5 S
• Name: S-ADENOSYL-L-HOMOCYSTEINE
• ChEMBL: CHEMBL418052
• DrugBank: DB01752
• ZINC: ZINC000004228232
• PDB chain: 7fbo Chain C Residue 401

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7fbo Structural and Molecular Basis of the Catalytic Mechanism of Geranyl Pyrophosphate C6-Methyltransferase: Creation of an Unprecedented Farnesyl Pyrophosphate C6-Methyltransferase.
• Resolution: 2.56 Å
• Binding residue (original residue number in PDB): Y28 Y47 H48 G102 G104 N125 D152 A153 I169 Y174 F175
• Binding residue (residue number reindexed from 1): Y7 Y26 H27 G81 G83 N104 D131 A132 I148 Y153 F154
• Annotation score: 4

Gene Ontology

Molecular Function

• GO:0008168 methyltransferase activity

Biological Process

• GO:0009058 biosynthetic process
• GO:0032259 methylation

External links

• PDB: RCSB:7fbo, PDBe:7fbo, PDBj:7fbo
• PDBsum: 7fbo
• PubMed: 34626048
• UniProt: A0A1V4D079;
  A0A2Z5X7B9