Structure of PDB 7e13 Chain C Binding Site BS01

Receptor Information
>7e13 Chain C (length=475) Species: 72917 (Erigeron canadensis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SRVKWTKQLNAPLEEIDPEIADIIELEKARQWKGFELIPSENFTSLSVMQ
AVGSVMTNKYSEGYPGARYYGGNEYIDMAERLCQKRALEAFNLDPSKWGV
NVQSLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAV
SIFFETMPYRLDESTGYIDYEQMEKSAVLFRPKLIVAGASAYARVYDYAR
MRKVCDKQKAILLADMAHISGLVAAGVVPSPFEYADVVTTTTHKSLRGPR
GAMIFFRKGLKEINKKGEEVMYDFEDKINQAVFPGLQGGPHNHTIAGLAV
ALKQATTPEYKAYQEQVLANCKRFSQSLIERGYSLVSGGTDNHLVLVNLR
DKGIDGSRVEKVMELAHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFL
EEDFVKVAELFDASVKLALKIKAASSGTKLKDFVATMNGDEKFQSEIKKI
RGEVEEYAKQFPTIGFEKETMKYKN
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain7e13 Chain C Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7e13 serine hydroxymethyltransferase
Resolution2.86 Å
Binding residue
(original residue number in PDB)		S144 G145 S146 H173 A227 S228 D253 A255 H256 T279 H281 K282
Binding residue
(residue number reindexed from 1)		S106 G107 S108 H135 A189 S190 D215 A217 H218 T241 H243 K244
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue Dec 3 01:02:38 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7e13', asym_id = 'C', bs = 'BS01', title = 'serine hydroxymethyltransferase'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7e13', asym_id='C', bs='BS01', title='serine hydroxymethyltransferase')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0004372,0019264,0030170,0035999', uniprot = '', pdbid = '7e13', asym_id = 'C'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004372,0019264,0030170,0035999', uniprot='', pdbid='7e13', asym_id='C')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>