Structure of PDB 7dvk Chain C Binding Site BS01

Receptor Information
>7dvk Chain C (length=163) Species: 295838 (Streptomyces rugosporus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IVDPGPLDVTALAVAAALAAGLHSAADDPAAALDKCIVLDELTEFAEKLV
VHDRPGGIGTTVEYVEVYEDASGVRLGTATGNAVVLKMEPHMWQFHQSVS
ELADGSFEAVGVIDCTAMLRRMTQVLRVTGRSGRYAGKSGFMTLAISDPN
QRPPHYSVQVVLC
Ligand information
Ligand IDHOF
InChIInChI=1S/C19H24N2O5/c1-21(2)17(22)15-6-4-5-7-16(15)20-19(24)26-12-13-8-10-14(11-9-13)18(23)25-3/h5,7-11,15-16H,4,6,12H2,1-3H3,(H,20,24)/t15-,16-/m0/s1
InChIKeyVSPPPQJKRCRPEW-HOTGVXAUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CN(C)C(=O)[C@H]1CCC=C[C@@H]1NC(=O)OCc2ccc(cc2)C(=O)OC
CACTVS 3.385COC(=O)c1ccc(COC(=O)N[C@H]2C=CCC[C@@H]2C(=O)N(C)C)cc1
OpenEye OEToolkits 2.0.7CN(C)C(=O)C1CCC=CC1NC(=O)OCc2ccc(cc2)C(=O)OC
CACTVS 3.385COC(=O)c1ccc(COC(=O)N[CH]2C=CCC[CH]2C(=O)N(C)C)cc1
FormulaC19 H24 N2 O5
Namemethyl 4-[[(1S,6S)-6-(dimethylcarbamoyl)cyclohex-2-en-1-yl]carbamoyloxymethyl]benzoate
ChEMBL
DrugBank
ZINC
PDB chain7dvk Chain C Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7dvk Exo-selective intermolecular Diels-Alder reaction by PyrI4 and AbnU on non-natural substrates.
Resolution2.6 Å
Binding residue
(original residue number in PDB)
E65 Y85 E87 Q115 H117 S119 L165 Y177
Binding residue
(residue number reindexed from 1)
E44 Y64 E66 Q94 H96 S98 L144 Y156
Annotation score1
Enzymatic activity
Enzyme Commision number 5.-.-.-
Gene Ontology
Molecular Function
GO:0016853 isomerase activity
Biological Process
GO:0017000 antibiotic biosynthetic process

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:7dvk, PDBe:7dvk, PDBj:7dvk
PDBsum7dvk
PubMed
UniProtK7QVW7|PYRI4_STRRG Spiro-conjugate synthase (Gene Name=pyrI4)

[Back to BioLiP]