Structure of PDB 6ypt Chain C Binding Site BS01

Receptor Information
>6ypt Chain C (length=145) Species: 12154 (Turnip yellow mosaic virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPTL
NCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEETNTLGLSTEHLTALA
HLYNFQATVYSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRL
Ligand information
Ligand IDGVE
InChIInChI=1S/C5H11NO2/c1-8-5(7)3-2-4-6/h2-4,6H2,1H3
InChIKeyKVQGGLZHHFGHPU-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.370
OpenEye OEToolkits 1.7.0		COC(=O)CCCN
ACDLabs 12.01O=C(OC)CCCN
FormulaC5 H11 N O2
NameMETHYL 4-AMINOBUTANOATE
ChEMBL
DrugBank
ZINCZINC000002019854
PDB chain6ypt Chain C Residue 901 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6ypt X-ray structure of Turnip Yellow Mosaic Virus PRO/DUB in complex with Ubiquitin
Resolution3.663 Å
Binding residue
(original residue number in PDB)		C783 H869
Binding residue
(residue number reindexed from 1)		C52 H138
Annotation score1
Enzymatic activity
Enzyme Commision number 2.1.1.-
2.7.7.48: RNA-directed RNA polymerase.
3.4.19.12: ubiquitinyl hydrolase 1.
3.4.22.-
3.6.4.-
Gene Ontology
Molecular Function
GO:0004197 cysteine-type endopeptidase activity
Biological Process
GO:0016032 viral process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6ypt, PDBe:6ypt, PDBj:6ypt
PDBsum6ypt
PubMed
UniProtP10358|POLR_TYMV RNA replicase polyprotein

[Back to BioLiP]