Structure of PDB 6yov Chain C Binding Site BS01

Receptor Information
>6yov Chain C (length=110) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEY
LTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGV
LPNIQAVLLP
Ligand information
>6yov Chain I (length=131) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ctgcaggccgctcaattggtcgtagacagctctagcaccgcttaaacgca
cgtacgcgctgtcccccgcgttttaaccgccaaggggattactccctagt
ctccaggcctttgttatgcaaatacatcctg
Receptor-Ligand Complex Structure
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PDB6yov Mechanisms of OCT4-SOX2 motif readout on nucleosomes.
Resolution3.42 Å
Binding residue
(original residue number in PDB)		K16 T17 R18 R30
Binding residue
(residue number reindexed from 1)		K8 T9 R10 R22
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030527 structural constituent of chromatin
GO:0031492 nucleosomal DNA binding
GO:0046982 protein heterodimerization activity
Biological Process
GO:0006325 chromatin organization
GO:0008285 negative regulation of cell population proliferation
GO:0031507 heterochromatin formation
GO:0061644 protein localization to CENP-A containing chromatin
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0005694 chromosome
GO:0043505 CENP-A containing nucleosome
GO:0070062 extracellular exosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6yov, PDBe:6yov, PDBj:6yov
PDBsum6yov
PubMed32327602
UniProtP04908|H2A1B_HUMAN Histone H2A type 1-B/E (Gene Name=H2AC4)

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