Structure of PDB 6yba Chain C Binding Site BS01

Receptor Information
>6yba Chain C (length=914) Species: 10524 (Human adenovirus 41) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ATPSMMPQWSYMHIAGQDASEYLSPGLVQFARATDTYFSLGNKFRNPTVA
PTHDVTTDRSQRLTLRFVPVDREDTAYSYKVRFTLAVGDNRVLDMASTYF
DIRGVLDRGPSFKPYSGTAYNSLAPKTAPNPCEWKDNNKIKVRGQAPFIG
TNINKDNGIQIGTDTTNQPIYADKTYQPEPQVGQTQWNSEVGAAQKVAGR
VLKDTTPMLPCYGSYAKPTNEKGGQASLITLTSDVNLQFFALPSTPNEPK
AVLYAENVSIEAPDTHLVYKPDVAQGTISSADLLTQQAAPNRPNYIGFRD
NFIGLMYYNSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLMLDALGDRS
RYFSMWNQAVDSYDPDVRIIENHGVEDELPNYCFPLGGSAATDTYSGIKA
NGQTWTADDNYADRGAEIESGNIFAMEINLAANLWRSFLYSNVALYLPDS
YKITPDNITLPENKNTYAYMNGRVAVPSALDTYVNIGARWSPDPMDNVNP
FNHHRNAGLRYRSMLLGNGRYVPFHIQVPQKFFAIKNLLLLPGSYTYEWN
FRKDVNMILQSSLGNDLRVDGASVRFDSINLYANFFPMAHNTASTLEAML
RNDTNDQSFNDYLCAANMLYPIPSNATSVPISIPSRNWAAFRGWSFTRLK
TKETPSLGSGFDPYFTYSGSVPYLDGTFYLNHTFKKVSIMFDSSVSWPGN
DRLLTPNEFEIKRTVDGEGYNVAQCNMTKDWFLIQMLSHYNIGYQGFYVP
ESYKDRMYSFFRNFQPMSRQVVNTTTYKEYQNVTLPFQHNNSGFVGYMGP
TMREGQAYPANYPYPLIGQTAVPSLTQKKFLCDRTMWRIPFSSNFMSMGA
LTDLGQNMLYANSAHALDMTFEVDPMDEPTLLYVLFEVFDVVRIHQPHRG
VIEAVYLRTPFSAG
Ligand information
>6yba Chain Y (length=29) Species: 10524 (Human adenovirus 41) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
NFASLAPRHGSRPFMGTWNEIGTSQLNGG
Receptor-Ligand Complex Structure
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PDB6yba Cryo-EM structure of enteric adenovirus HAdV-F41 highlights structural variations among human adenoviruses.
Resolution4.0 Å
Binding residue
(original residue number in PDB)		D19 S21 E22 P48 T49 V50 P52 V56 Y619 R845
Binding residue
(residue number reindexed from 1)		D18 S20 E21 P47 T48 V49 P51 V55 Y612 R838
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Biological Process
GO:0046718 symbiont entry into host cell
GO:0075521 microtubule-dependent intracellular transport of viral material towards nucleus
Cellular Component
GO:0019028 viral capsid
GO:0039623 T=25 icosahedral viral capsid
GO:0042025 host cell nucleus
GO:0043657 host cell

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6yba, PDBe:6yba, PDBj:6yba
PDBsum6yba
PubMed33627423
UniProtP11820|CAPSH_ADE41 Hexon protein (Gene Name=L3)

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