Structure of PDB 6yan Chain C Binding Site BS01

Receptor Information
>6yan Chain C (length=208) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINL
KRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAG
RFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTD
SPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDL
YFYRDPEE
Ligand information
>6yan Chain 2 (length=1744) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagcauaugcuugucucaaagauuaagcca
ugcaugucuaaguacgcacggccgguacagugaaacugcgaauggcucau
uaaaucaguuaugguuccuuuggucgccuacuuggauaacugugguaauu
cuagagcuaauacaugccgacggcgcugacucccuuugugugggaugcgu
gcauuuaucagaucaaaaccaacccggucggcggcuuuggugacucuaga
uaaccucgggccgaucgcagcccuccguggcggcgacgacccauucgaac
gucugcccuaucaacuuucgaugguagucgccgugccuaccauggugacc
acgggugacggggaaucaggguucgauuccggagagggagccugagaaac
ggcuaccacauccaaggaaggcagcaggcgcgcaaauuacccacucccga
cccggggagguagugacgaaaaauaacaauacaggacucuuucgaggccc
uguaauuggaaugaguccacuuuaaauccuuuaacgaggauccauuggag
ggcaagucuggucgcagcagccgcgguaauuccagcuccaauagcguaua
uuaaaguugcugcaguuaaaaagcucguaguuggaucuuguggaggguuc
cccgccccuugccucucggcgccggcccgaagcguuuacuuugaaaaaau
uagaguguucaaagcaggcccgagccgccuggauaccgcagcuaggaaua
auggaauaggaccgcgguucuauuuuguugguuuucggaacugaggccau
gauuaagagggacggccgggggcauucguauugcgccgcuagaggugaaa
uucuuggaccggcgcaagacggaccagagcgaaagcauuugccaagaaug
uuuucauuaaucaagaacgaaagucggagguucgaagacgaucagauacc
gucguaguuccgaccauaaacgaugccgacuggcgaugcggcggcguuau
ucccaugacccgccgggcagcuuccgggaaaccaaagucuuuggguuccg
gggggaguaugguugcaaagcugaaacuuaaaggaauugacggaagggca
ccaccaggaguggagccugcggcuuaauuugacucaacacgggaaaccuc
acccggcccggacacggacaggauugacagauugauagcucuuucucgau
ucugugggugguggugcauggccguucuuaguugguggagcgauuugucu
gguuaauuccgauaacgaacgagacucuggcaugcuaacuaguuacgcga
cccccgagcggucggcgucccccaacuucuuagagggacaaguggcguuc
agccacccgagauugagcaauaacaggucugugaugcccuuagaugucgg
ggcugcacgcgcgcuacacugacuggcucagcgugugccuacccuacgcc
ggcaggcgcggguaacccguugaaccccauucgugauggggaucggggau
ugcaauuauuccccaugaacgaggaauucccaguaagugcgggucauaag
cuugcguugauuaagucccugcccuuuguacacaccgcccgucgcuacua
ccgauuggaugguuuagugaggcccucggaucggcccgccggggugcccu
ggcggagcgcugagaagacggucgaacuugacuaucuagaggaaguaaaa
gucguaacaagguuuccguaggugaaccugcggaaggaucauua
...<<<<<...[[[[>>>>>[[[.((((((.....{{.........[[[.
[[[..<<....<<....<<..........>>...>>.>>......{{...
.....[[[......{{....[[[.........<<.....<<.<<<.....
>>>.>>......>>........<<<<...<<.<......>.>>...>>>>
[[..(((((.....<<<<<<<<<<<<.....>>>....<......>..))
)))......]]...<<<<.<<<......>>>.>>>>....]]]...}}..
..]]].<<<....<<<....<<<<<<<.........>>>>>>>>>>....
..>>>...<<<.<<<<....>>>>....>>>.}}.<<.<<<.........
.>>>.>>.<.<<....>>.>...]]]]]].........<<<....<<<<.
..>>>>..>>>......}}.......<<<<<<<<<.<<<....>>>.>>.
>>>>.>>>......<<..<...........>..>>.........<<<<<(
(....<.<<<<.....<<..))>>.......>>>>>>>>>>..)))))).
]]]............{{.......{{...[[[.[[....<<<<.<<...>
>>>>>........<......<<..>>....>....<<<<<<.<.......
<<...<.......>.<<<<.......>>>>...>>......>.>>>..>>
>.......[[....(((((((.....>>>>>>>>>.)))))))...]]..
..]]....<<<<<<..<...<<<<..<<..<<<<<<<<...<<<......
>>>......>>>>>>>>..>>.......<<....>>...>>>>..>..>>
>.>>>...]]]...}}......<<<<<<<...<...<<<<.<.....>.>
>>>...>>>>>>>>..........<<<.<<.<<<..<.<<<<<<.<<<<<
....>>>>>>>>>>>.>..>>>...<<..}}>>...>>.....>>>....
.<<<......<<<......>>>....>>>..]]]]..<<<<<.<<<<<<<
..<<..<<<<<..<<<.<<<<<<......<<........>>.........
.<<<<<......<<<<<<.......<<.<<<........>>>.>>.....
>>>>>>...<<.<<<..<<<<<<<<<....<<<.<<<<<....>>>...<
<<......>>>...>>.>>>....<<<...<...<<<<..<<<<....<<
<.<.<<<....>>>>.>>>....>>>>..>>>>..>.....<<<<<....
.>>>>>........>>>....>>>.>>>...>.>>>>>>>......>>>>
>...>>.>>>>.>>>.....<<.<<<........<.......<<<.<<<<
....>>>>.>>>....>.........>>>.>>............<<<<<.
.........>>>>>...........>>>>>.....<<<<<<<<.......
>>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<..<<<<.
<<....<<<<<<<<.<<<..<<<<.<<...<<<<<.<<<<<<<<..>>>>
>>>>....>>>>>...>>.>>>>..>>>.>>>>>>>>...>>.>>>>...
>.>>...>.....<<<<<<<<<....>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6yan Structural Insights into the Mammalian Late-Stage Initiation Complexes.
Resolution3.48 Å
Binding residue
(original residue number in PDB)		F32 R102 P105 T109 N110 Q132 R155
Binding residue
(residue number reindexed from 1)		F31 R101 P104 T108 N109 Q131 R154
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6yan, PDBe:6yan, PDBj:6yan
PDBsum6yan
PubMed32268096
UniProtG1TLT8|RSSA_RABIT Small ribosomal subunit protein uS2 (Gene Name=RPSA)

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