Structure of PDB 6y5x Chain C Binding Site BS01

Receptor Information
>6y5x Chain C (length=273) Species: 1497391 (New Jersey polyomavirus-2013) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TTEIELWLEPRMGVNAPTGDRKEWYGYSEVIHHADGYDNNLLSVQMPQYS
CARVQLPMLNTDMTCETLMMWEAVSCKTEVVGIGSLISVHLLEAKMEAGP
NSDGPSRPIEGMNYHMFAVGGEPLDLQGIESNGQTKYATAIPAKSIHPND
IAKLPEEDKAQLQGLVPKAKAKLDKDGFYPVEEWSPDPSRNENSRYYGSF
VGGLQTPPNLQFTNAVSTVLLDENGVGPLCKGDGLFVSCADICGVLVKAD
NEAIRYRGLPRYFKVTLRKRAVK
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain6y5x Chain C Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6y5x Structural Basis and Evolution of Glycan Receptor Specificities within the Polyomavirus Family.
Resolution2.3 Å
Binding residue
(original residue number in PDB)		S237 E240
Binding residue
(residue number reindexed from 1)		S189 E192
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:6y5x, PDBe:6y5x, PDBj:6y5x
PDBsum6y5x
PubMed32723915
UniProtA0A024B5J2

[Back to BioLiP]