Structure of PDB 6xj5 Chain C Binding Site BS01

Receptor Information

>6xj5 Chain C (length=389) Species: 312 (Pseudomonas sp. RS-16) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

QKRDNVLFQAATDEQPAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELK
NLGFTVTRSKSAGLVVGDNIVGKIKGRGGKNLLLMSHMDTVYLKGILAKA
PFRVEGDKAYGPGIADDKGGNAVILHTLKLLKEYGVRDYGTITVLFNTDE
EKGSFGSRDLIQEEAKLADYVLSFEPTCAGDEKLSLGTSGIAYVQVNITG
KASHAGAAPELGVNALVEASDLVLRTMNIDDKAKNLRFNWTIAKAGNVSN
IIPASATLNADVRYARNEDFDAAMKTLEERAQQKKLPEADVKVIVTRGRP
AFNAGEGGKKLVDKAVAYYKEAGGTLGVEERTGGGTDAAYAALSGKPVIE
SLGLPGFGYHSDKAEYVDISAIPRRLYMAARLIMDLGAG

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

6xj5 Chain C Residue 500 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	6xj5 A Bis(imidazole)-based cysteine labeling tool for metalloprotein assembly.
Resolution	3.11 Å
Binding residue (original residue number in PDB)	D141 E176 H385
Binding residue (residue number reindexed from 1)	D116 E151 H360
Annotation score	1

Enzymatic activity

Enzyme Commision number

3.4.17.11: glutamate carboxypeptidase.

Gene Ontology

	Molecular Function
GO:0004180	carboxypeptidase activity
GO:0008237	metallopeptidase activity
GO:0016787	hydrolase activity
GO:0046872	metal ion binding

	Biological Process
GO:0006508	proteolysis

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:6xj5, PDBe:6xj5, PDBj:6xj5
PDBsum	6xj5
PubMed	37030124
UniProt	P06621\|CBPG_PSES6 Carboxypeptidase G2 (Gene Name=cpg2)

[Back to BioLiP]