Structure of PDB 6wvj Chain C Binding Site BS01

Receptor Information
>6wvj Chain C (length=1117) Species: 1423 (Bacillus subtilis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFLDEGLREMFQD
ISPIEDFTGNLSLEFIDYSLGEPKYPVEESKERDVTYSAPLRVKVRLINK
ETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFSGKVD
KNGKKGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGF
GSDQEILDLIGENEYLRNTLDKDNTENSDKALLEIYERLRPGEPPTVENA
KSLLDSRFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAETLVDPERRT
LDKVLPYLENGIGFRKLYPNGGVVEDEVTLQSIKIFAPTDQEGEQVINVI
GNAYIEEEIKNITPADIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGE
LLQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGS
SQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRM
CPIETPEGPNIGLINSLSSYAKVNRFGFIETPYRRVDPETGKVTGRIDYL
TADEEDNYVVAQANARLDDEGAFIDDSIVARFRGENTVVSRNRVDYMDVS
PKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPEAPFVGTGMEY
VSGKDSGAAVICKHPGIVERVEAKNVWVRRYEEVDGQKVKGNLDKYSLLK
FVRSNQGTCYNQRPIVSVGDEVVKGEILADGPSMELGELALGRNVMVGFM
TWDGYNYEDAIIMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIP
NVGEDALRNLDDRGIIRIGAEVKDGDLLVGKVTPEVRDTSLRVPHGGGGI
IHDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVIS
KILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHMGMAARYLGIH
IASPVFDGAREEDVWETLEEAGMSRDAKTVLYDGRTGEPFDNRVSVGIMY
MIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY
GAAYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIKELQ
SLGMDVKILSGDEEEIE
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6wvj Molecular basis for RNA polymerase-dependent transcription complex recycling by the helicase-like motor protein HelD.
Resolution3.36 Å
Binding residue
(original residue number in PDB)		G1066 K1067 R1074
Binding residue
(residue number reindexed from 1)		G1030 K1031 R1038
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0032549 ribonucleoside binding
GO:0034062 5'-3' RNA polymerase activity
Biological Process
GO:0006351 DNA-templated transcription
GO:0046677 response to antibiotic
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6wvj, PDBe:6wvj, PDBj:6wvj
PDBsum6wvj
PubMed33339820
UniProtP37870|RPOB_BACSU DNA-directed RNA polymerase subunit beta (Gene Name=rpoB)

[Back to BioLiP]