Structure of PDB 6v11 Chain C Binding Site BS01

Receptor Information
>6v11 Chain C (length=503) Species: 632 (Yersinia pestis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ALKRKIEAAKMPKDAREKTEAELQKLKMMSPMSAEATVVRGYIDWMLQVP
WNSRSKVKKDLVKAQEVLDTDHYGLERVKDRILEYLAVQSRVSKIKGPIL
CLVGPPGVGKTSLGQSIAKATGRQYVRMALGRRTIGSMPGKLIQKMAKVG
VKNPLFLLDEIDKMPASALLEVLDPEQNVAFNDHYLEVDYDLSDVMFVAT
SNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKQHLLPKQFERNAIKKGEL
TIDDSAIMSIIYYTREAGVRSLEREISKLCRKAVKNLLMDKTVKHIEING
DNLKDFLGVQKVDYGRADTENRVGQVTGLAWTEVGGDLLTIETACVPGKG
KLTYTGSLGEVMQESIQAALTVVRARADKLGINPDFYEKRDIHVHVPEGA
TPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGLVLPIGGLKEK
LLAAHRGGIKVVLIPDDNKRDLEEIPDNVIADLEIHPVKRIDDVLAIALE
HPA
Ligand information
Ligand IDADP
InChIInChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyXTWYTFMLZFPYCI-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N
FormulaC10 H15 N5 O10 P2
NameADENOSINE-5'-DIPHOSPHATE
ChEMBLCHEMBL14830
DrugBankDB16833
ZINCZINC000012360703
PDB chain6v11 Chain C Residue 800 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6v11 Structural basis for distinct operational modes and protease activation in AAA+ protease Lon.
Resolution3.8 Å
Binding residue
(original residue number in PDB)		D323 H324 G359 V360 G361 K362 T363 S364 V541 R542
Binding residue
(residue number reindexed from 1)		D71 H72 G107 V108 G109 K110 T111 S112 V269 R270
Annotation score5
Enzymatic activity
Enzyme Commision number 3.4.21.53: endopeptidase La.
Gene Ontology
Molecular Function
GO:0004176 ATP-dependent peptidase activity
GO:0004252 serine-type endopeptidase activity
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity
Biological Process
GO:0006508 proteolysis
GO:0030163 protein catabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6v11, PDBe:6v11, PDBj:6v11
PDBsum6v11
PubMed32490208
UniProtA0A5P8YJ65

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