Structure of PDB 6kpd Chain C Binding Site BS01

Receptor Information
>6kpd Chain C (length=376) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LKPEERGLYLIHLLLTCANHVASGSLQNANAALEQLSHLASPDGDTMQRI
AAYFTEALANRILKSWPGLYKALNATQTRTNNVSEEIHVRRLFFEMFPIL
KVSYLLTNRAILEAMEGEKMVHVIDLDASEPAQWLALLQAFNSRPEGPPH
LRITGVHHQKEVLEQMAHRLIEEAEKLDIPFQFNPVVSRLDCLNVEQLRV
KTGEALAVSSVLQLHTFLASGRTDSFLNAIWGLSPKVMVVTEQDSDHNGS
TLMERLLESLYTYAALFDCLETKVPRTSQDRIKVEKMLFGEEIKNIISCE
GFERRERHEKLEKWSQRIDLAGFGNVPLSYYAMLQARRLLQGCGFDGYRI
KEESGCAVICWQDRPLYSVSAWRCRK
Ligand information
>6kpd Chain B (length=14) Species: 3702 (Arabidopsis thaliana) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
SMSATALLQKAAQM
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6kpd Structure of the SCL3 homodimer bound to the BIRD/IDD transcription factor
Resolution3.2 Å
Binding residue
(original residue number in PDB)		G51 L52 I55 T90 Y367 A371 D374
Binding residue
(residue number reindexed from 1)		G7 L8 I11 T46 Y261 A265 D268
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003700 DNA-binding transcription factor activity
GO:0005515 protein binding
Biological Process
GO:0006355 regulation of DNA-templated transcription
GO:0009739 response to gibberellin
Cellular Component
GO:0005634 nucleus

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6kpd, PDBe:6kpd, PDBj:6kpd
PDBsum6kpd
PubMed
UniProtQ9LPR8|SCL3_ARATH Scarecrow-like protein 3 (Gene Name=SCL3)

[Back to BioLiP]