Structure of PDB 6k5h Chain C Binding Site BS01
Receptor Information
>6k5h Chain C (length=287) Species:
763924
(Phytophthora capsici LT1534) [
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AMPTHSDGTVLHLGLRAGQVANRIVSVGSLGRAKVLAQLLDEGHFETFES
ARGFTTYSGKVKGVPVSIVATGMGVPNMDFVVRETRAVVNGPMTIIRFGT
CGAVREEVPPGSVVVNGKGSIMVTRNPDAFFPGASEEDCYRVSRVMPSSS
TLSKALVASMEDKLTALRAEPVIAASSDCDALRVFDGLNATACSFYSSQG
RLDSNFDDRNEKLVEDLTTAHPDLYTVEMETFHLLDLAQRSRGSIQATAA
VLVVANLSGQIVESEVLEALESFWGGVVLQTIVSTPL
Ligand information
Ligand ID
R1P
InChI
InChI=1S/C5H11O8P/c6-1-2-3(7)4(8)5(12-2)13-14(9,10)11/h2-8H,1H2,(H2,9,10,11)/t2-,3-,4-,5-/m1/s1
InChIKey
YXJDFQJKERBOBM-TXICZTDVSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
C([C@@H]1[C@H]([C@H]([C@H](O1)OP(=O)(O)O)O)O)O
OpenEye OEToolkits 1.5.0
C(C1C(C(C(O1)OP(=O)(O)O)O)O)O
CACTVS 3.341
OC[C@H]1O[C@H](O[P](O)(O)=O)[C@H](O)[C@@H]1O
CACTVS 3.341
OC[CH]1O[CH](O[P](O)(O)=O)[CH](O)[CH]1O
ACDLabs 10.04
O=P(OC1OC(C(O)C1O)CO)(O)O
Formula
C5 H11 O8 P
Name
1-O-phosphono-alpha-D-ribofuranose;
RIBOSE-1-PHOSPHATE;
1-O-phosphono-alpha-D-ribose;
1-O-phosphono-D-ribose;
1-O-phosphono-ribose
ChEMBL
CHEMBL603367
DrugBank
DB03101
ZINC
ZINC000004228268
PDB chain
6k5h Chain B Residue 402 [
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Receptor-Ligand Complex Structure
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PDB
6k5h
Structural and catalytic analysis of two diverse uridine phosphorylases in Phytophthora capsici.
Resolution
2.503 Å
Binding residue
(original residue number in PDB)
H19 R59
Binding residue
(residue number reindexed from 1)
H12 R52
Annotation score
5
Enzymatic activity
Enzyme Commision number
2.4.2.3
: uridine phosphorylase.
Gene Ontology
Molecular Function
GO:0003824
catalytic activity
GO:0004850
uridine phosphorylase activity
GO:0016757
glycosyltransferase activity
GO:0047847
deoxyuridine phosphorylase activity
Biological Process
GO:0006218
uridine catabolic process
GO:0009116
nucleoside metabolic process
Cellular Component
GO:0005829
cytosol
View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:6k5h
,
PDBe:6k5h
,
PDBj:6k5h
PDBsum
6k5h
PubMed
32493959
UniProt
A0A410UCT3
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