Structure of PDB 6jlu Chain C Binding Site BS01

Receptor Information
>6jlu Chain C (length=450) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IAGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGLMVFWAGAMVLFEV
SHFVPEKPTYEQGFILIQHLATLGYGIGPGGEITSTVPYFAVGVIHLISS
AILGFGGIYHSLLGPDTLEESFPFFGYDWRDKNKMTTILGIHLCLLGLGS
FLLVIKAMYLGGVYDTWAPGGGDVRYITTPTLNPIVIFGYVFRSPFGGDG
WVVSVNNMEDVIGGHIWVGILCIVGGIWHIFTKPFAWARRAFVWSGEAYL
SYSLAAISLMGFTAALYSWYNNTAYPSELYGPTGPEASQAQAFTFLVRDQ
RLGANVSSAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGP
NGLDINKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNYVSP
RSWLCCSHFFLAFFFLVGHWWHAGRARAAAAGFEKGIDRDFEPVLSMTPL
Ligand information
Ligand IDOEX
InChIInChI=1S/Ca.4Mn.5O
InChIKeySEXWDHMBWJEXOJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.370O12|[Ca]3O4|[Mn]1O5|[Mn]2[O]36[Mn]O[Mn@]456
CACTVS 3.370O12|[Ca]3O4|[Mn]1O5|[Mn]2[O]36[Mn]O[Mn]456
OpenEye OEToolkits 1.7.0O1[Mn]O23[Mn]14O5[Ca]2O6[Mn]5O4[Mn]36
OpenEye OEToolkits 1.7.0O1[Mn][O@]23[Mn@@]14[O@]5[Ca]2[O@@]6[Mn]5[O@]4[Mn]36
FormulaCa Mn4 O5
NameCA-MN4-O5 CLUSTER
ChEMBL
DrugBank
ZINC
PDB chain6jlu Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6jlu The pigment-protein network of a diatom photosystem II-light-harvesting antenna supercomplex.
Resolution3.02 Å
Binding residue
(original residue number in PDB)		E354 R357
Binding residue
(residue number reindexed from 1)		E332 R335
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Nov 17 00:30:25 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6jlu', asym_id = 'C', bs = 'BS01', title = 'The pigment-protein network of a diatom photosystem II-light-harvesting antenna supercomplex.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6jlu', asym_id='C', bs='BS01', title='The pigment-protein network of a diatom photosystem II-light-harvesting antenna supercomplex.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0009521,0009523,0009767,0009772,0015979,0016020,0016168,0019684,0045156', uniprot = '', pdbid = '6jlu', asym_id = 'C'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009521,0009523,0009767,0009772,0015979,0016020,0016168,0019684,0045156', uniprot='', pdbid='6jlu', asym_id='C')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>