Structure of PDB 6j9f Chain C Binding Site BS01

Receptor Information
>6j9f Chain C (length=1296) Species: 342109 (Xanthomonas oryzae pv. oryzae MAFF 311018) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLDLGLHAALKSVF
PISSYSGNAALEYVGYKLGQPVFDERECRQRGMSYGAPLRVTVRLVIYDR
ESSTKAIKYVKEQEVYLGEIPLMTGNGTFIVNGTERVIVSQLHRSPGVFF
DHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDALFTRIDRRRKLPVS
ILLRALGYNNEEMLAEFFEINTFHIVQLELVPERLRGETLNFDLADGDKV
IVEAGKRITARHVKQLEAAGVAALAVPDDYLVGRILSHDVVDGSTGELLA
NANDEISEDQLTAFRKAGVDAVGTLWVNDLDRGPYLSNTLRIDPTKTQLE
ALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGR
KDVLGESVLYDKKYFAERNDEESKRLVAEHTDTSDILEVIKVLTEIRNGR
GVVDDIDHLGNRRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTP
QELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGPGGLT
RERAGFEVRDVHPTHYGRVCTIETPEGPNIGLINSLAVFARTNQYGFLET
PYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLTEQFVPCRFQ
GESLLKPPSEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQA
VPTLRSQKPLVGTGIERAVARDSGVTVNALRGGVIEQIDAARIVVKVNEA
EIAGVDIYNLIKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGE
LALGQNMLIAFMPWNGYNFEDSILLSERVVEEDRYTTIHIEELTCVARDT
KLGPEEISADIPNVSEQALNRLDESGVVYIGAEVRAGDIMVGKVTPKGSD
VKDSSLRVPPGMDGTVIDVQVFTRDGIEKDKRARQIEENEIKRVKKDFDD
QFRILEAAIYARLRSQIVGKIERAQKQIQAHEKEFEARFADKRGKITQGD
DLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMAT
GESVDIVLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQRMLEAQAAVSE
LRKFLDDIYNHDQRVDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAE
IKRMLELADLPQSGQTQLYDGRTGEAFDRKTTVGYMHYLKLNHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK
SDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAIHMELE
Ligand information
Receptor-Ligand Complex Structure
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PDB6j9f Structural basis for transcription antitermination at bacterial intrinsic terminator.
Resolution3.95 Å
Binding residue
(original residue number in PDB)		N144 G1303 K1304 R1311 M1315
Binding residue
(residue number reindexed from 1)		N132 G1217 K1218 R1225 M1229
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0032549 ribonucleoside binding
GO:0034062 5'-3' RNA polymerase activity
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6j9f, PDBe:6j9f, PDBj:6j9f
PDBsum6j9f
PubMed31296855
UniProtQ2NZX8|RPOB_XANOM DNA-directed RNA polymerase subunit beta (Gene Name=rpoB)

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