Structure of PDB 6bwc Chain C Binding Site BS01
Receptor Information
>6bwc Chain C (length=327) Species:
1218175
(Bacillus thuringiensis HD-771) [
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MFFKDKNVLIIGGTGTIGKSILSNVLQEKPKVVRVFSRSEYNQFLLQEEF
RDKNRNIRYLIGDIRNYDRVFSAMENIDYVFHVAAMKHVSFCEYNPFEAV
LTNIFGTQNVIKAAIAQKVKKVVFTSSNAAISPTNNYGATKLTAERLITS
AEYSKGSSETTFTSVRFGNVMGSRGSVIPLFENQIKENQKITVTDLSMSR
FMMTLNQATMLTIEAMKIAKGGETFILKMPVISLNDLSEVMIEEVTKLYG
LENIKIEEIGLKPGEKMYEELMTHDESLQAFELPDMFIIPSPLKAKRAKA
GFYRSDNQNAISKEELRNLILNQQLLT
Ligand information
Ligand ID
NAP
InChI
InChI=1S/C21H28N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(44-46(33,34)35)14(30)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)15(31)20(42-10)27-3-1-2-9(4-27)18(23)32/h1-4,7-8,10-11,13-16,20-21,29-31H,5-6H2,(H7-,22,23,24,25,32,33,34,35,36,37,38,39)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
InChIKey
XJLXINKUBYWONI-NNYOXOHSSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P@@](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)([O-])O[P@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
Formula
C21 H28 N7 O17 P3
Name
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE;
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
ChEMBL
CHEMBL295069
DrugBank
DB03461
ZINC
PDB chain
6bwc Chain C Residue 400 [
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Receptor-Ligand Complex Structure
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PDB
6bwc
Molecular architectures of Pen and Pal: Key enzymes required for CMP-pseudaminic acid biosynthesis in Bacillus thuringiensis.
Resolution
2.7 Å
Binding residue
(original residue number in PDB)
G12 T14 G15 T16 I17 S37 R38 S39 D63 I64 V83 A84 K87 T125 S127 Y137 K141 F167 V170 S173 R174
Binding residue
(residue number reindexed from 1)
G12 T14 G15 T16 I17 S37 R38 S39 D63 I64 V83 A84 K87 T125 S127 Y137 K141 F167 V170 S173 R174
Annotation score
4
External links
PDB
RCSB:6bwc
,
PDBe:6bwc
,
PDBj:6bwc
PDBsum
6bwc
PubMed
29266550
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