Structure of PDB 5xvn Chain C Binding Site BS01

Receptor Information

>5xvn Chain C (length=285) Species: 749498 (Enterococcus faecalis TX0027)

MGWRTVVVNKHSKLSYKNNHLVFKAIDHQELIHLSEIDVLLLETTDISLT
TMLLKRLIDEKILVLFCDDKRLPIGKILPFYGRHDSSLQLTRQLAWTEER
KGQVWTAIIAQKITNQSLHLAQRDYGQKAAALLAMRAELRLFDPANREGH
AARSYFNTLFGNDFTREQENDINAGLNYGYTLLLSIFARELVQTGCFTQL
GLKHFNDFNLASDLMEPFRPLVDQIIYENRKEAFPIMKRKLFALFMNTYM
YKKKQMFLTNIATDYTKHVVKVLNQEEEGVPEFGI

Ligand information

>5xvn Chain G (length=25)

tcgtagctgaggcctcagctacgtt

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5xvn How type II CRISPR-Cas establish immunity through Cas1-Cas2-mediated spacer integration.
• Resolution: 3.25 Å
• Binding residue (original residue number in PDB): K70 R71 N177 Y178 T181 L182 S185 K241 F245
• Binding residue (residue number reindexed from 1): K70 R71 N177 Y178 T181 L182 S185 K238 F242

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 16 01:48:27 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5xvn', asym_id = 'C', bs = 'BS01', title = 'How type II CRISPR-Cas establish immunity through Cas1-Cas2-mediated spacer integration.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5xvn', asym_id='C', bs='BS01', title='How type II CRISPR-Cas establish immunity through Cas1-Cas2-mediated spacer integration.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003676,0004519,0004520,0043571,0046872,0051607', uniprot = '', pdbid = '5xvn', asym_id = 'C'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003676,0004519,0004520,0043571,0046872,0051607', uniprot='', pdbid='5xvn', asym_id='C')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>