Structure of PDB 5wyi Chain C Binding Site BS01

Receptor Information
>5wyi Chain C (length=133) Species: 285006 (Saccharomyces cerevisiae RM11-1a) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GARIKTLSVSRPIIYGNTAKKMAPAEHTHLWTIFVRGPQNEDISYFIKKV
VFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFY
HRLRLHPEVSSVYFDEIVFNEPNEEFFKILMSR
Ligand information
Ligand IDSLL
InChIInChI=1S/C10H18N2O5/c11-7(10(16)17)3-1-2-6-12-8(13)4-5-9(14)15/h7H,1-6,11H2,(H,12,13)(H,14,15)(H,16,17)/t7-/m0/s1
InChIKeyZAFOVBXOMIXMTH-ZETCQYMHSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C(O)C(N)CCCCNC(=O)CCC(=O)O
CACTVS 3.370N[CH](CCCCNC(=O)CCC(O)=O)C(O)=O
OpenEye OEToolkits 1.7.0C(CCNC(=O)CCC(=O)O)CC(C(=O)O)N
OpenEye OEToolkits 1.7.0C(CCNC(=O)CCC(=O)O)C[C@@H](C(=O)O)N
CACTVS 3.370N[C@@H](CCCCNC(=O)CCC(O)=O)C(O)=O
FormulaC10 H18 N2 O5
Name(2S)-2-azanyl-6-[(4-hydroxy-4-oxo-butanoyl)amino]hexanoic acid;
6-N-succinyl-L-lysine
ChEMBL
DrugBank
ZINCZINC000071754172
PDB chain5wyi Chain C Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5wyi The Yaf9 YEATS domain Recognizing H3K122suc Peptide
Resolution2.0 Å
Binding residue
(original residue number in PDB)		H39 H67 T69 Y70 W89 E91
Binding residue
(residue number reindexed from 1)		H27 H55 T57 Y58 W77 E79
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0006355 regulation of DNA-templated transcription

View graph for
Biological Process
External links
PDB RCSB:5wyi, PDBe:5wyi, PDBj:5wyi
PDBsum5wyi
PubMed
UniProtB3LNW5

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