Structure of PDB 5vyg Chain C Binding Site BS01
Receptor Information
>5vyg Chain C (length=42) Species:
9606
(Homo sapiens) [
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DIVDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCELL
Ligand information
Ligand ID
BGC
InChI
InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6-/m1/s1
InChIKey
WQZGKKKJIJFFOK-VFUOTHLCSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.7.6
C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.370
OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O
CACTVS 3.370
OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.7.6
C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
ACDLabs 12.01
OC1C(O)C(OC(O)C1O)CO
Formula
C6 H12 O6
Name
beta-D-glucopyranose;
beta-D-glucose;
D-glucose;
glucose
ChEMBL
CHEMBL1614854
DrugBank
DB02379
ZINC
ZINC000003833800
PDB chain
5vyg Chain F Residue 1 [
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Receptor-Ligand Complex Structure
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PDB
5vyg
O-Glycosylation modulates the stability of epidermal growth factor-like repeats and thereby regulates Notch trafficking
Resolution
2.2 Å
Binding residue
(original residue number in PDB)
Q50 S53 Y69
Binding residue
(residue number reindexed from 1)
Q7 S10 Y26
Annotation score
4
Enzymatic activity
Enzyme Commision number
3.4.21.22
: coagulation factor IXa.
Gene Ontology
Molecular Function
GO:0005509
calcium ion binding
View graph for
Molecular Function
External links
PDB
RCSB:5vyg
,
PDBe:5vyg
,
PDBj:5vyg
PDBsum
5vyg
PubMed
28729422
UniProt
P00740
|FA9_HUMAN Coagulation factor IX (Gene Name=F9)
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