Structure of PDB 5vh2 Chain C Binding Site BS01

Receptor Information
>5vh2 Chain C (length=203) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DEAPVFTQQQYNRLGLRETAGIGTSVIVVRATDKDVNYRILSGAEGKFEI
DESTGLIVTVDYLDYETKTSYLMNVSATDGAPPFNQGFCSVYVTLLNELD
EAVQFSNASYEAVIMENLALGTEIVRVQAYDIDNLNQITYRFDAYTSAQA
KALFKIDAITGVITVKGLVDREKGDFYTLTVVADDGGPKVDSTVKVYITV
LDE
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain5vh2 Chain C Residue 1401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5vh2 Zooming in on Cadherin-23: Structural Diversity and Potential Mechanisms of Inherited Deafness.
Resolution2.84 Å
Binding residue
(original residue number in PDB)		E1197 D1249 E1251 D1285 E1286
Binding residue
(residue number reindexed from 1)		E18 D64 E66 D100 E101
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding
Biological Process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules
Cellular Component
GO:0016020 membrane

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5vh2, PDBe:5vh2, PDBj:5vh2
PDBsum5vh2
PubMed30033219
UniProtQ99PF4|CAD23_MOUSE Cadherin-23 (Gene Name=Cdh23)

[Back to BioLiP]