Structure of PDB 5vcp Chain C Binding Site BS01

Receptor Information
>5vcp Chain C (length=161) Species: 266265 (Paraburkholderia xenovorans LB400) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IREILKMGDPRLLRIADPVDHFDTPELHELVKDMFETMHDANGAGLAAPQ
IGVNLQVVIFGFGPPVPETVLINPTITPVSQDMEEGWEGCLSVPGLRGAV
SRFSMIKYHGFDQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRINDFA
KFGFTEVLFPD
Ligand information
Ligand IDFE2
InChIInChI=1S/Fe/q+2
InChIKeyCWYNVVGOOAEACU-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Fe+2]
CACTVS 3.341[Fe++]
FormulaFe
NameFE (II) ION
ChEMBL
DrugBankDB14510
ZINC
PDB chain5vcp Chain C Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5vcp Crystal structure of a peptide deformylase from Burkholderia xenovorans in complex with actinonin
Resolution1.95 Å
Binding residue
(original residue number in PDB)		Q51 C99 H141 H145
Binding residue
(residue number reindexed from 1)		Q50 C90 H132 H136
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) G46 Q51 C99 L100 H141 E142 H145
Catalytic site (residue number reindexed from 1) G45 Q50 C90 L91 H132 E133 H136
Enzyme Commision number 3.5.1.88: peptide deformylase.
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0018206 peptidyl-methionine modification

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Molecular Function
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Biological Process
External links
PDB RCSB:5vcp, PDBe:5vcp, PDBj:5vcp
PDBsum5vcp
PubMed
UniProtQ13XB1

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