Structure of PDB 5uzw Chain C Binding Site BS01

Receptor Information

>5uzw Chain C (length=697) Species: 39387 (Gypsophila vaccaria)

GFSKPLHYPPVRRDETVVDDYFGVKVADPYRWLEDPNSEETKEFVDNQEK
LANSVLEECELIDKFKQKIIDFVNFPRCGVPFRRANKYFHFYNSGLQAQN
VFQMQDDLDGKPEVLYDPNLREGGRSGLSLYSVSEDAKYFAFGIHSGLTE
WVTIKILKTEDRSYLPDTLEWVKFSPAIWTHDNKGFFYCPYPPVNQEARY
HFLGTDQSEDILLWRDLENPAHHLKCQITDDGKYFLLYILDGCDDANKVY
CLDLTKLPNGLESFRAPFMKLIDSFDASYTAIANDGSVFTFQTNKDAPRK
KLVRVDLNNPSVWTDLVPESKKDLLESAHAVNENQLILRYLSDVKHVLEI
RDLESGALQHRLPIDIGSVDGITARRRDSVVFFKFTSILTPGIVYQCDLK
NDPTQLKIFRESVVPDFDRSEFEVKQVFVPSKDGTKIPIFIAARKGISLD
GSHPCEMHGYGGFGINMMPTFSASRIVFLKHLGGVFCLANIRGGGEYGEE
WHKAGFRDKKQNVFDDFISAAEYLISSGYTKARRVAIEGGSNGGLLVAAC
INQRPDLFGCAEANCGVMDMLRFHKFTLGYLWTGDYGCSDKEEEFKWLIK
YSPIHNVRRPWEQPGNEETQYPATMILTADHDDRVVPLHSFKLLATMQHV
LCTSLEDSPQKNPIIARIQRGRATMTQIAEVADRYGFMAKALEAPWI

Ligand information

>5uzw Chain G (length=6) Species: 39387 (Gypsophila vaccaria)

NASAPV

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5uzw Characterization of the macrocyclase involved in the biosynthesis of RiPP cyclic peptides in plants.
• Resolution: 2.82 Å
• Binding residue (original residue number in PDB): R81 F95 A102 N104 L132 F492 S493 A494 S495 T701
• Binding residue (residue number reindexed from 1): R77 F91 A98 N100 L128 F471 S472 A473 S474 T674

Enzymatic activity

• Catalytic site (original residue number in PDB): Y481 S562 D653
• Catalytic site (residue number reindexed from 1): Y460 S541 D632
• Enzyme Commision number: 3.4.21.-
  3.4.21.26: prolyl oligopeptidase.

Gene Ontology

Molecular Function

• GO:0004252 serine-type endopeptidase activity
• GO:0008236 serine-type peptidase activity
• GO:0046872 metal ion binding
• GO:0070012 oligopeptidase activity

Biological Process

• GO:0006508 proteolysis

Cellular Component

• GO:0005829 cytosol

External links

• PDB: RCSB:5uzw, PDBe:5uzw, PDBj:5uzw
• PDBsum: 5uzw
• PubMed: 28584123
• UniProt: R4P353