Structure of PDB 5tzs Chain C Binding Site BS01

Receptor Information
>5tzs Chain C (length=115) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLL
VGLDKFSNIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNE
LKKAFTSYDRTLLIA
Ligand information
>5tzs Chain 1 (length=515) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
caugcaugucuaaguauaagcaauuuauacagugaaacugcgaauggcuc
auuaaaucaguuaucguuuauuugauaguuccaugguauaacugugguaa
uucuagagcuaauacaugcuuguauuuauuaggaugauucauaauaacuu
uucgaaucgcauggccuugugcuggcgaugguucauucaaauuucugccc
uaucaacuuucgaugguaggauaguggccuaccaugguuucaacggguaa
cggggauuccggagagggagccugagaaacggcuaccacauccaaggaag
gcagcaggcgcguuacccaauccuaauucagggagguagugaaacgauac
agggccggucuuaauuggaaugaguacaauguaaauaccuuaacgagaag
ggcaccaccaggaguggagccugcggcgcgcgcuacacugacggagccag
cggaaacuccgucgugacgaggaauuccuaguaagcgcaagugcguugau
uacgucccugcccuu
..<<<..<<....<<....<<..........>>...>>.>>......<<.
.......<<<..<<..<<....<<<..........<.....<<.<<....
...>>.>>......>......<...<<<<<<.<......>.>>>>>>...
..>...<<<<..<<<.....>>>.>>>>....>>>...>>>>..>>>.<<
<....<<<....<<<<<<<<.......>>>>>>>>>>>......>>>...
<<<.....>>>.>>.<<.<<<..........>>>.>>.<.<<....>>.>
...>>>........<<<....<<<.....>>>..>>>.......<<<<<.
.<<<<<>>>>>>>.>>>......<<..<...........>..>>...<<<
<<<<..<<..<<<<<..<<<.<<<...>>>.>>>.....<<<<<<<....
......>>>>>>>..........>>>>>.....<<<<<<..>>>>>>...
...>>...>>>>>>>
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5tzs Architecture of the yeast small subunit processome.
Resolution5.1 Å
Binding residue
(original residue number in PDB)		S15 G71 G72 G73 V75
Binding residue
(residue number reindexed from 1)		S11 G67 G68 G69 V71
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006412 translation
GO:0006413 translational initiation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:0030686 90S preribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5tzs, PDBe:5tzs, PDBj:5tzs
PDBsum5tzs
PubMed27980088
UniProtP0CX51|RS16A_YEAST Small ribosomal subunit protein uS9A (Gene Name=RPS16A)

[Back to BioLiP]