Structure of PDB 5t5m Chain C Binding Site BS01

Receptor Information

>5t5m Chain C (length=269) Species: 145261 (Methanothermobacter wolfeii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

SEIILTPKEQPEVPLEAPNIKPDVFAGKSIEEIKNIQIMHGNEVVKLGDF
FEVSGEPADAPEDIKIIIDGDVYNTKRIGQEMTAGEIIVRGNVNMYVGAG
MKGGKITVEGNAGSWAGQDMRGGEIEILGDAGDYVGSSYRGDWRGMSGGT
ITVHGNADNEIGEYMNGGKIIIKGDVNIMPGIHMNNGLIIIEGNVVARAG
GEMAGGTIVVKGMMQEFLAGFKYLGVEKDIEVDGEELPGAFYKFEGDHAI
KGAKGIVYAAVGCNGHIAP

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

5t5m Chain C Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	5t5m The methanogenic CO2 reducing-and-fixing enzyme is bifunctional and contains 46 [4Fe-4S] clusters.
Resolution	2.5 Å
Binding residue (original residue number in PDB)	S139 Y140 D143
Binding residue (residue number reindexed from 1)	S138 Y139 D142
Annotation score	1

Enzymatic activity

Enzyme Commision number

1.2.7.12: formylmethanofuran dehydrogenase.

Gene Ontology

	Molecular Function
GO:0016491	oxidoreductase activity
GO:0018493	formylmethanofuran dehydrogenase activity
GO:0046914	transition metal ion binding

	Biological Process
GO:0015948	methanogenesis
GO:0019386	methanogenesis, from carbon dioxide

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:5t5m, PDBe:5t5m, PDBj:5t5m
PDBsum	5t5m
PubMed	27846502
UniProt	O74031\|FWDC_METWO Tungsten-containing formylmethanofuran dehydrogenase 2 subunit C (Gene Name=fwdC)

[Back to BioLiP]