Structure of PDB 5oxs Chain C Binding Site BS01

Receptor Information
>5oxs Chain C (length=153) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DVASLRQQVEALQGQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAGFVK
PFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAKNEAAFLSMTDSKTEG
KFTYPTGESLVYSNWAPGEPNDDGGSEDCVEIFTNGKWNDRACGEKRLVV
CEF
Ligand information
Ligand IDK5B
InChIInChI=1S/C8H12O7/c9-2-5-7(12)6(11)4(15-5)1-3(10)8(13)14/h4-7,9,11-12H,1-2H2,(H,13,14)/t4-,5+,6+,7+/m0/s1
InChIKeyHVHHMEMCULPBED-BDVNFPICSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6C(C1C(C(C(O1)CO)O)O)C(=O)C(=O)O
CACTVS 3.385OC[C@H]1O[C@@H](CC(=O)C(O)=O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 2.0.6C([C@H]1[C@H]([C@@H]([C@H](O1)CO)O)O)C(=O)C(=O)O
CACTVS 3.385OC[CH]1O[CH](CC(=O)C(O)=O)[CH](O)[CH]1O
FormulaC8 H12 O7
Name4,7-anhydro-3-deoxy-D-gluco-oct-2-ulosonic acid;
4,7-anhydro-3-deoxy-D-manno-oct-2-ulosonic acid
ChEMBL
DrugBank
ZINC
PDB chain5oxs Chain F Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5oxs Structural definition of hSP-D recognition of Salmonella enterica LPS inner core oligosaccharides reveals alternative binding modes for the same LPS.
Resolution1.65 Å
Binding residue
(original residue number in PDB)		D325 R343
Binding residue
(residue number reindexed from 1)		D123 R141
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:5oxs, PDBe:5oxs, PDBj:5oxs
PDBsum5oxs
PubMed29912941
UniProtP35247|SFTPD_HUMAN Pulmonary surfactant-associated protein D (Gene Name=SFTPD)

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