Structure of PDB 5lxh Chain C Binding Site BS01

Receptor Information
>5lxh Chain C (length=114) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKARVPDLDKRKYLVPS
DLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDY
FLYVAYSDESVYGK
Ligand information
Receptor-Ligand Complex Structure
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PDB5lxh ATG4B contains a C-terminal LIR motif important for binding and efficient cleavage of mammalian orthologs of yeast Atg8.
Resolution1.58 Å
Binding residue
(original residue number in PDB)		E17 K20 I21 Y25 R28 K46 K48 Y49 L50 P52 L63 R67 F104
Binding residue
(residue number reindexed from 1)		E17 K20 I21 Y25 R28 K43 K45 Y46 L47 P49 L60 R64 F101
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0005543 phospholipid binding
GO:0008429 phosphatidylethanolamine binding
GO:0030957 Tat protein binding
GO:0031625 ubiquitin protein ligase binding
GO:0048487 beta-tubulin binding
GO:0050811 GABA receptor binding
Biological Process
GO:0000045 autophagosome assembly
GO:0000422 autophagy of mitochondrion
GO:0006914 autophagy
GO:0006995 cellular response to nitrogen starvation
GO:0061723 glycophagy
GO:0097352 autophagosome maturation
Cellular Component
GO:0000421 autophagosome membrane
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005776 autophagosome
GO:0005783 endoplasmic reticulum
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0016020 membrane
GO:0030659 cytoplasmic vesicle membrane
GO:0031410 cytoplasmic vesicle

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5lxh, PDBe:5lxh, PDBj:5lxh
PDBsum5lxh
PubMed28287329
UniProtQ9H0R8|GBRL1_HUMAN Gamma-aminobutyric acid receptor-associated protein-like 1 (Gene Name=GABARAPL1)

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