Structure of PDB 5kd4 Chain C Binding Site BS01

Receptor Information
>5kd4 Chain C (length=273) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARW
IEQEGPEYWERETRRAKGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGC
DVESDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAG
AAERDRAYLEGECVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTL
RCWALGFYPADITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVPL
GKEQKYTCHVEHEGLPEPLTLRW
Ligand information
>5kd4 Chain Q (length=10) Species: 11676 (Human immunodeficiency virus 1) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
IGPGRAFYVI
Receptor-Ligand Complex Structure
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PDB5kd4 Effects of Cross-Presentation, Antigen Processing, and Peptide Binding in HIV Evasion of T Cell Immunity.
Resolution3.05 Å
Binding residue
(original residue number in PDB)		Y7 R62 E63 R66 N70 S73 F74 D77 W97 T143 K146 W147 A150 A152 R155 Y159 W167 Y171
Binding residue
(residue number reindexed from 1)		Y6 R61 E62 R65 N69 S72 F73 D76 W96 T142 K145 W146 A149 A151 R154 Y158 W166 Y170
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:5kd4, PDBe:5kd4, PDBj:5kd4
PDBsum5kd4
PubMed29374075
UniProtP01900|HA12_MOUSE H-2 class I histocompatibility antigen, D-D alpha chain (Gene Name=H2-D1)

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