Structure of PDB 5gop Chain C Binding Site BS01

Receptor Information
>5gop Chain C (length=434) Species: 103690 (Nostoc sp. PCC 7120 = FACHB-418) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ETESWKLLESSIIYYEGNPIGTVAAQDPEQCFLRDFVPSAFVFLMDGQTD
IVRNFLIETLTLQSHEKEMDCFQPGAGLMPASFKVEEYLVADFGEKAIAR
VPPVDSCMWWILLLRAYEKATGDLTLAREPKFQAGIKLILDLCLAHRFSM
YPTMLVPDGAFMIDRRMGVYEHPLEIQVLFYAALRAARELLLPDGDGEQY
LNKVHGRLGALQYHIRNYYWVDLKRLREIYRYKGNEFGKEIANKFNIFSQ
SIPDWVIEWLPEKGGYLAGNLGPGRMDFRFFALGNLMAILAGLASEEESQ
RIMNLFAHRWEDLIGYMPVKICYPALQGLEWQIVTGCDPKNIPWSYHNGG
NWPVLLWLFTAAALKTGKVELAHEAIAIAEGRLSNDKFPEYYDGNNGRLI
GKEARIYQTWSIAGLLVAKQFLANPDHVEFISFP
Ligand information
Ligand IDGLC
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6+/m1/s1
InChIKeyWQZGKKKJIJFFOK-DVKNGEFBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namealpha-D-glucopyranose;
alpha-D-glucose;
D-glucose;
glucose
ChEMBLCHEMBL423707
DrugBank
ZINCZINC000003861213
PDB chain5gop Chain E Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5gop Structural Analysis of the Catalytic Mechanism and Substrate Specificity of Anabaena Alkaline Invertase InvA Reveals a Novel Glucosidase
Resolution2.35 Å
Binding residue
(original residue number in PDB)		F51 R53 D54 M186 D188 Y370 H371
Binding residue
(residue number reindexed from 1)		F32 R34 D35 M162 D164 Y346 H347
Annotation score5
Enzymatic activity
Enzyme Commision number 3.2.1.26: beta-fructofuranosidase.
Gene Ontology
Molecular Function
GO:0004564 beta-fructofuranosidase activity
GO:0004575 sucrose alpha-glucosidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0033926 endo-alpha-N-acetylgalactosaminidase activity
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0005987 sucrose catabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5gop, PDBe:5gop, PDBj:5gop
PDBsum5gop
PubMed27777307
UniProtQ8YWS9

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