Structure of PDB 5gip Chain C Binding Site BS01

Receptor Information
>5gip Chain C (length=122) Species: 2287 (Saccharolobus solfataricus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVII
AEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAILE
PGEAKDLVDEIIKRVNEIKGKT
Ligand information
>5gip Chain G (length=31) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucuugugaugagaacacucauggucugaaga
...............................
Receptor-Ligand Complex Structure
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PDB5gip Box C/D guide RNAs recognize a maximum of 10 nt of substrates
Resolution3.129 Å
Binding residue
(original residue number in PDB)		E41 K44 R48
Binding residue
(residue number reindexed from 1)		E35 K38 R42
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0004526 ribonuclease P activity
GO:0019843 rRNA binding
Biological Process
GO:0001682 tRNA 5'-leader removal
GO:0006412 translation
GO:0008033 tRNA processing
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5gip, PDBe:5gip, PDBj:5gip
PDBsum5gip
PubMed27625427
UniProtP55858|RL7A_SACS2 Large ribosomal subunit protein eL8 (Gene Name=rpl7ae)

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