Structure of PDB 5dny Chain C Binding Site BS01
Receptor Information
>5dny Chain C (length=351) Species:
243232
(Methanocaldococcus jannaschii DSM 2661) [
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MMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKILEIKPDVVLHSGDL
FNDLRPPVKALRIAMQAFKKLHENNIKVYIVAGNHEMPRRLGEESPLALL
KDYVKILDGKDVINVNGEEIFICGTYYHKKSKREEMLDKLKNFESEAKNY
KKKILMLHQGINPYIPLDYELEHFDLPKFSYYALGHIHKRILERFNDGIL
AYSGSTEIIYRNEYEDYKKEGKGFYLVDFSGNDLDISDIEKIDIECREFV
EVNIKDKKSFNEAVNKIERCKNKPVVFGKIKREFKPWFDTLKDKILINKA
IIVDDNIKELLVDYANRQGIDGDLVLSLYKALLNNENWKELLDEYYNTKF
R
Ligand information
Ligand ID
MG
InChI
InChI=1S/Mg/q+2
InChIKey
JLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
Software
SMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Mg+2]
CACTVS 3.341
[Mg++]
Formula
Mg
Name
MAGNESIUM ION
ChEMBL
DrugBank
DB01378
ZINC
PDB chain
5dny Chain C Residue 401 [
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Receptor-Ligand Complex Structure
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PDB
5dny
ATP-dependent DNA binding, unwinding, and resection by the Mre11/Rad50 complex.
Resolution
3.11 Å
Binding residue
(original residue number in PDB)
D49 N84 H158 H186
Binding residue
(residue number reindexed from 1)
D49 N84 H158 H186
Annotation score
4
Enzymatic activity
Enzyme Commision number
3.1.-.-
Gene Ontology
Molecular Function
GO:0000403
Y-form DNA binding
GO:0003677
DNA binding
GO:0004519
endonuclease activity
GO:0004527
exonuclease activity
GO:0004529
DNA exonuclease activity
GO:0008408
3'-5' exonuclease activity
GO:0016787
hydrolase activity
GO:0030145
manganese ion binding
GO:0042802
identical protein binding
GO:0045027
DNA end binding
GO:0046872
metal ion binding
Biological Process
GO:0006281
DNA repair
GO:0006302
double-strand break repair
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:5dny
,
PDBe:5dny
,
PDBj:5dny
PDBsum
5dny
PubMed
26717941
UniProt
Q58719
|MRE11_METJA DNA double-strand break repair protein Mre11 (Gene Name=mre11)
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