Structure of PDB 5d5m Chain C Binding Site BS01

Receptor Information
>5d5m Chain C (length=269) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTYDSVTRQKEPRAPWM
AENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHSGSHTYQRMIGCEL
LEDGSTTGFLQYAYDGQDFLIFNKDTLSWLAVDNVAHTIKQAWEANQHEL
LYQKNWLEEECIAWLKRFLEYGKDTLQRTEPPLVRVNRKETFPGVTALFC
KAHGFYPPEIYMTWMKNGEEIVQEIDYGDILPSGDGTYQAWASIELDPQS
SNLYSCHVEHSGVHMVLQV
Ligand information
Ligand ID2LJ
InChIInChI=1S/C12H20N4O6/c1-2-3-13-8-10(15-12(22)16-11(8)21)14-4-6(18)9(20)7(19)5-17/h3,6-7,9,17-20H,2,4-5H2,1H3,(H3,14,15,16,21,22)/b13-3+/t6-,7+,9-/m0/s1
InChIKeyYCMPUNANLDFPQG-FHZGFTDOSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCC=NC1=C(NC[C@H](O)[C@H](O)[C@H](O)CO)NC(=O)NC1=O
OpenEye OEToolkits 2.0.6CC/C=N/C1=C(NC(=O)NC1=O)NC[C@@H]([C@@H]([C@@H](CO)O)O)O
CACTVS 3.385CCC=NC1=C(NC[CH](O)[CH](O)[CH](O)CO)NC(=O)NC1=O
ACDLabs 12.01C1(=O)NC(NC(=C1\N=C\CC)NCC(O)C(O)C(O)CO)=O
OpenEye OEToolkits 2.0.6CCC=NC1=C(NC(=O)NC1=O)NCC(C(C(CO)O)O)O
FormulaC12 H20 N4 O6
Name1-deoxy-1-({2,6-dioxo-5-[(E)-propylideneamino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-ribitol;
5-(2-oxopropylideneamino)-6-D-ribitylaminouracil
ChEMBL
DrugBank
ZINC
PDB chain5d5m Chain C Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5d5m Diversity of T Cells Restricted by the MHC Class I-Related Molecule MR1 Facilitates Differential Antigen Recognition.
Resolution2.2 Å
Binding residue
(original residue number in PDB)
Y7 R9 S24 K43 H58 Y62 L66 W69 R94 I96 Y152 Q153 W156
Binding residue
(residue number reindexed from 1)
Y7 R9 S24 K43 H58 Y62 L66 W69 R94 I96 Y152 Q153 W156
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:5d5m, PDBe:5d5m, PDBj:5d5m
PDBsum5d5m
PubMed26795251
UniProtQ95460|HMR1_HUMAN Major histocompatibility complex class I-related gene protein (Gene Name=MR1)

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