Structure of PDB 5brp Chain C Binding Site BS01

Receptor Information
>5brp Chain C (length=555) Species: 279010 (Bacillus licheniformis DSM 13 = ATCC 14580) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NPWWKKAVVYQIYPKSFKDTTGNGVGDIRGIIEKLDYIKELACDVIWLTP
IYQSPQNDNGYDISDYYSIHEEYGTMADFEELLEEAHKRGIKVIMDLVVN
HTSTEHRWFKEAASGKENLYRDFYIWKDMKPNGAPPTNWESKFGGSAWEF
HAESGQYYLHLYDVTQADLNWENEAVRKKVYEMMHFWFEKGIDGFQLDVI
NVISKDQRFPDDDEGDGRRFYTDGPRVHEFLNEMNREVFSKYDSMTVGEM
SSTTIADCIRYTNPESRELDMVFNFHHLKADYPNGEKWALADFDFLKLKK
ILSEWQTEMNKGGGWNALFWCNHDQPRIVSRYGDDGKYRKKSAKMLATAI
HMLQGTPYIYQGEELGMTNPKFDDISLYRDVESLNMYRILKEAGKPEAEI
IEILKAKSRDNSRTPVQWNGEENAGFTAGTPWIPVPDNYKEINAEEALND
PDSIFYHYKKLNELRKEFDIITTGDYQLILEDDQELYAYLRNGADEKLLV
INNFYGKETEFQLPDDIDIEGYDAKVLISNDTDLPESFKRFTVKPYQSIV
YHLAK
Ligand information
Ligand IDPNG
InChIInChI=1S/C12H15NO8/c14-5-8-9(15)10(16)11(17)12(21-8)20-7-3-1-6(2-4-7)13(18)19/h1-4,8-12,14-17H,5H2/t8-,9-,10+,11-,12+/m1/s1
InChIKeyIFBHRQDFSNCLOZ-ZIQFBCGOSA-N
SMILES
SoftwareSMILES
CACTVS 3.341OC[C@H]1O[C@H](Oc2ccc(cc2)[N+]([O-])=O)[C@H](O)[C@@H](O)[C@@H]1O
ACDLabs 10.04[O-][N+](=O)c2ccc(OC1OC(C(O)C(O)C1O)CO)cc2
OpenEye OEToolkits 1.5.0c1cc(ccc1[N+](=O)[O-])O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O
OpenEye OEToolkits 1.5.0c1cc(ccc1[N+](=O)[O-])OC2C(C(C(C(O2)CO)O)O)O
CACTVS 3.341OC[CH]1O[CH](Oc2ccc(cc2)[N+]([O-])=O)[CH](O)[CH](O)[CH]1O
FormulaC12 H15 N O8
Name4-nitrophenyl alpha-D-glucopyranoside;
4'-NITROPHENYL-ALPHA-D-GLUCOPYRANOSIDE;
4-nitrophenyl alpha-D-glucoside;
4-nitrophenyl D-glucoside;
4-nitrophenyl glucoside
ChEMBLCHEMBL1235365
DrugBank
ZINCZINC000004282228
PDB chain5brp Chain C Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5brp Bacillus licheniformis trehalose-6-phosphate hydrolase structures suggest keys to substrate specificity
Resolution2.05 Å
Binding residue
(original residue number in PDB)
D63 Y66 H106 F148 Y167 D203 V204 E254 R414
Binding residue
(residue number reindexed from 1)
D58 Y61 H101 F143 Y162 D198 V199 E249 R409
Annotation score2
Enzymatic activity
Catalytic site (original residue number in PDB) D101 Q201 D203 E254 H328 D329
Catalytic site (residue number reindexed from 1) D96 Q196 D198 E249 H323 D324
Enzyme Commision number 3.2.1.93: alpha,alpha-phosphotrehalase.
Gene Ontology
Molecular Function
GO:0004556 alpha-amylase activity
GO:0008788 alpha,alpha-phosphotrehalase activity
GO:0016787 hydrolase activity
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0005991 trehalose metabolic process
GO:0005993 trehalose catabolic process
GO:0009313 oligosaccharide catabolic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:5brp, PDBe:5brp, PDBj:5brp
PDBsum5brp
PubMed26894535
UniProtQ65MI2

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