Structure of PDB 4ww2 Chain C Binding Site BS01

Receptor Information
>4ww2 Chain C (length=275) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSNDSDTVRSLKP
WSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGC
EVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDK
WTRETVQWLLNGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRL
LLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDILPNADETWYLRATLDVV
AGEAAGLSCRVKHSSLEGQDIVLYW
Ligand information
Ligand IDJLS
InChIInChI=1S/C48H93NO9/c1-3-5-7-9-11-13-15-17-18-19-20-21-22-23-24-25-27-29-31-33-35-37-43(52)49-40(39-57-48-47(56)46(55)45(54)42(38-50)58-48)44(53)41(51)36-34-32-30-28-26-16-14-12-10-8-6-4-2/h17-18,40-42,44-48,50-51,53-56H,3-16,19-39H2,1-2H3,(H,49,52)/b18-17-/t40-,41+,42+,44-,45-,46-,47+,48-/m0/s1
InChIKeyQMLKBWVXCMTWOZ-WWHSRKRPSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6CCCCCCCCCCCCCCC(C(C(COC1C(C(C(C(O1)CO)O)O)O)NC(=O)CCCCCCCCCCCCCC=CCCCCCCCC)O)O
CACTVS 3.385CCCCCCCCCCCCCC[C@@H](O)[C@@H](O)[C@H](CO[C@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O)NC(=O)CCCCCCCCCCCCC\C=C/CCCCCCCC
ACDLabs 12.01O=C(NC(COC1OC(C(O)C(O)C1O)CO)C(O)C(O)CCCCCCCCCCCCCC)CCCCCCCCCCCCC\C=C/CCCCCCCC
OpenEye OEToolkits 1.7.6CCCCCCCCCCCCCC[C@H]([C@H]([C@H](CO[C@@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)NC(=O)CCCCCCCCCCCCC/C=C\CCCCCCCC)O)O
CACTVS 3.385CCCCCCCCCCCCCC[CH](O)[CH](O)[CH](CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O)NC(=O)CCCCCCCCCCCCCC=CCCCCCCCC
FormulaC48 H93 N O9
Name(15Z)-N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]tetracos-15-enamide;
PBS-44
ChEMBL
DrugBank
ZINCZINC000098209053
PDB chain4ww2 Chain C Residue 303 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4ww2 Atypical natural killer T-cell receptor recognition of CD1d-lipid antigens.
Resolution2.48 Å
Binding residue
(original residue number in PDB)
C12 L13 Q14 V47 F70 Y73 S76 F77 D80 L90 D151 W153 T154 L161 F169
Binding residue
(residue number reindexed from 1)
C10 L11 Q12 V45 F68 Y71 S74 F75 D78 L88 D149 W151 T152 L159 F167
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:4ww2, PDBe:4ww2, PDBj:4ww2
PDBsum4ww2
PubMed26875526
UniProtP15813|CD1D_HUMAN Antigen-presenting glycoprotein CD1d (Gene Name=CD1D)

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