Structure of PDB 4lcw Chain C Binding Site BS01

Receptor Information
>4lcw Chain C (length=256) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTYDSVTRQAEPRAPW
MAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHSGSHTYQRMIGCE
LLEDGSTTGFLQYAYDGQDFLIFNKDTLSWLAVDNVAHTIKQAWEANQHE
LLYQKNWLEEECIAWLKRFLEYGKDTLQRTEPPLVRVNRKTALFCKAHGF
YPPEIYMTWMKNGEEIDYGDILPSGDGTYQAWASIELSNLYSCHVEHSGV
HMVLQV
Ligand information
Ligand ID1VY
InChIInChI=1S/C12H16N4O7/c1-4-11(22)16(2-5(18)8(20)6(19)3-17)9-7(13-4)10(21)15-12(23)14-9/h5-6,8,17-20,22H,2-3H2,1H3,(H,15,21,23)/t5-,6+,8-/m0/s1
InChIKeyCOXMGTTXHPRZBO-BBVRLYRLSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6CC1=C(N(C2=NC(=O)NC(=O)C2=N1)CC(C(C(CO)O)O)O)O
CACTVS 3.385CC1=C(O)N(C[C@H](O)[C@H](O)[C@H](O)CO)C2=NC(=O)NC(=O)C2=N1
OpenEye OEToolkits 1.7.6CC1=C(N(C2=NC(=O)NC(=O)C2=N1)C[C@@H]([C@@H]([C@@H](CO)O)O)O)O
ACDLabs 12.01O=C1C2=NC(=C(O)N(C2=NC(=O)N1)CC(O)C(O)C(O)CO)C
CACTVS 3.385CC1=C(O)N(C[CH](O)[CH](O)[CH](O)CO)C2=NC(=O)NC(=O)C2=N1
FormulaC12 H16 N4 O7
Name1-deoxy-1-(7-hydroxy-6-methyl-2,4-dioxo-3,4-dihydropteridin-8(2H)-yl)-D-ribitol
ChEMBL
DrugBank
ZINC
PDB chain4lcw Chain C Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4lcw Antigen-loaded MR1 tetramers define T cell receptor heterogeneity in mucosal-associated invariant T cells.
Resolution2.4 Å
Binding residue
(original residue number in PDB)
Y7 R9 S24 Y62 L66 W69 R94 I96 Y152 W156
Binding residue
(residue number reindexed from 1)
Y8 R10 S25 Y63 L67 W70 R95 I97 Y153 W157
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:4lcw, PDBe:4lcw, PDBj:4lcw
PDBsum4lcw
PubMed24101382
UniProtQ95460|HMR1_HUMAN Major histocompatibility complex class I-related gene protein (Gene Name=MR1)

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