Structure of PDB 4kr4 Chain C Binding Site BS01

Receptor Information
>4kr4 Chain C (length=334) Species: 90370 (Salmonella enterica subsp. enterica serovar Typhi) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MEIYNKNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLT
GFGQWEYRTKADRAEGEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYD
VESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVDGLSFG
IQYQGKNQDNHINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRD
GNGDRAESRAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQ
NLEVVAQYQFDFGLRPAISYVQSKGKQLNSADLAKYIQAGATYYFNKNMN
VWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF
Ligand information
Ligand IDAIC
InChIInChI=1S/C16H19N3O4S/c1-16(2)11(15(22)23)19-13(21)10(14(19)24-16)18-12(20)9(17)8-6-4-3-5-7-8/h3-7,9-11,14H,17H2,1-2H3,(H,18,20)(H,22,23)/t9-,10-,11+,14-/m1/s1
InChIKeyAVKUERGKIZMTKX-NJBDSQKTSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=C(O)C2N3C(=O)C(NC(=O)C(c1ccccc1)N)C3SC2(C)C
OpenEye OEToolkits 1.5.0CC1(C(N2C(S1)C(C2=O)NC(=O)C(c3ccccc3)N)C(=O)O)C
CACTVS 3.341CC1(C)S[C@@H]2[C@H](NC(=O)[C@H](N)c3ccccc3)C(=O)N2[C@H]1C(O)=O
OpenEye OEToolkits 1.5.0CC1([C@@H](N2[C@H](S1)[C@@H](C2=O)NC(=O)[C@@H](c3ccccc3)N)C(=O)O)C
CACTVS 3.341CC1(C)S[CH]2[CH](NC(=O)[CH](N)c3ccccc3)C(=O)N2[CH]1C(O)=O
FormulaC16 H19 N3 O4 S
Name(2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID;
AMPICILLIN;
D(-)-ALPHA-AMINOBENZYLPENICILLIN;
6-[D(-)-ALPHA-AMINOPHENYLLACETAMIDO]PENICILLANIC ACID
ChEMBLCHEMBL174
DrugBankDB00415
ZINCZINC000003830218
PDB chain4kr4 Chain C Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4kr4 Salmonella typhi OmpF complex with Ampicillin
Resolution3.8 Å
Binding residue
(original residue number in PDB)
R20 Y36 R60 S114 G115 E116
Binding residue
(residue number reindexed from 1)
R18 Y34 R58 S112 G113 E114
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0006811 monoatomic ion transport
GO:0034220 monoatomic ion transmembrane transport
Cellular Component
GO:0009279 cell outer membrane
GO:0016020 membrane
GO:0046930 pore complex

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:4kr4, PDBe:4kr4, PDBj:4kr4
PDBsum4kr4
PubMed
UniProtP37432|OMPF_SALTY Outer membrane porin F (Gene Name=ompF)

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