Structure of PDB 4k6w Chain C Binding Site BS01

Receptor Information
>4k6w Chain C (length=184) Species: 52275 (Human adenovirus D37) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DTRTLWTTPDTSPNCTIAQDKDSKLTLVLTKCGSQILANVSLIVVAGKYH
IINNKTNPKIKSFTIKLLFNKNGVLLDNSNLGKAYWNFRSGNSNVSTAYE
KAIGFMPNLVAYPKPSNSKKYARDIVYGTIYLGGKPDQPAVIKTTFNQET
GCEYSITFNFSWSKTYENVEFETTSFTFSYIAQE
Ligand information
Ligand ID18D
InChIInChI=1S/C12H21NO9/c1-2-7(17)13-8-5(15)3-12(21,11(19)20)22-10(8)9(18)6(16)4-14/h5-6,8-10,14-16,18,21H,2-4H2,1H3,(H,13,17)(H,19,20)/t5-,6+,8+,9+,10+,12+/m0/s1
InChIKeyQZBCMZXFDLYCRV-BLMTXZDNSA-N
SMILES
SoftwareSMILES
CACTVS 3.352CCC(=O)N[CH]1[CH](O)C[C](O)(O[CH]1[CH](O)[CH](O)CO)C(O)=O
OpenEye OEToolkits 1.6.1CCC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)O)O
ACDLabs 10.04O=C(O)C1(O)OC(C(O)C(O)CO)C(NC(=O)CC)C(O)C1
OpenEye OEToolkits 1.6.1CCC(=O)NC1C(CC(OC1C(C(CO)O)O)(C(=O)O)O)O
CACTVS 3.352CCC(=O)N[C@@H]1[C@@H](O)C[C@@](O)(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O
FormulaC12 H21 N O9
Name3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid;
3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulosonic acid;
3,5-dideoxy-5-(propanoylamino)-D-glycero-D-galacto-non-2-ulosonic acid;
3,5-dideoxy-5-(propanoylamino)-D-glycero-galacto-non-2-ulosonic acid
ChEMBL
DrugBank
ZINCZINC000058633548
PDB chain4k6w Chain C Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4k6w Triazole linker-based trivalent sialic acid inhibitors of adenovirus type 37 infection of human corneal epithelial cells.
Resolution1.5 Å
Binding residue
(original residue number in PDB)
Y312 P317 D318 K345
Binding residue
(residue number reindexed from 1)
Y131 P136 D137 K164
Annotation score1
Binding affinityPDBbind-CN: -logKd/Ki=5.35,IC50=4.5uM
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0007155 cell adhesion
GO:0019058 viral life cycle
GO:0019062 virion attachment to host cell
Cellular Component
GO:0019028 viral capsid

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:4k6w, PDBe:4k6w, PDBj:4k6w
PDBsum4k6w
PubMed26177934
UniProtQ64823

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