Structure of PDB 4gxq Chain C Binding Site BS01
Receptor Information
>4gxq Chain C (length=506) Species:
258594,266265
[
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
MNANLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGL
QVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAE
PKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATI
DRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLI
HALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMARATVLMGVP
TFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERY
GMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMI
EVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKD
LVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLKRE
FAPSEILAEELKAFVKDRLAKFKMPKKVIFVDDLPRNTMGAVQKNVLRET
YKDIYK
Ligand information
Ligand ID
ATP
InChI
InChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKey
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341
Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04
O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341
Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
Formula
C10 H16 N5 O13 P3
Name
ADENOSINE-5'-TRIPHOSPHATE
ChEMBL
CHEMBL14249
DrugBank
DB00171
ZINC
ZINC000004261765
PDB chain
4gxq Chain C Residue 601 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
4gxq
Structural Insights into the Substrate Specificity of the Rhodopseudomonas palustris Protein Acetyltransferase RpPat: IDENTIFICATION OF A LOOP CRITICAL FOR RECOGNITION BY RpPat.
Resolution
2.0 Å
Binding residue
(original residue number in PDB)
T163 S164 G165 T166 T167 H207 S277 A278 P279 E298 M302 T303 V322 D382 R397
Binding residue
(residue number reindexed from 1)
T163 S164 G165 T166 T167 H207 S277 A278 P279 E298 M302 T303 V322 D382 R397
Annotation score
5
Enzymatic activity
Catalytic site (original residue number in PDB)
T163 N183 H207 T303 E304 I403 N408 A491
Catalytic site (residue number reindexed from 1)
T163 N183 H207 T303 E304 I403 N408 A491
Enzyme Commision number
6.2.1.-
6.2.1.25
: benzoate--CoA ligase.
External links
PDB
RCSB:4gxq
,
PDBe:4gxq
,
PDBj:4gxq
PDBsum
4gxq
PubMed
23076154
UniProt
Q13WK3
;
Q6ND88
[
Back to BioLiP
]